| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3884 |
|---|
| Symbol | |
|---|
| ID | 6118233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4733396 |
|---|
| End bp | 4734106 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641635446 |
|---|
| Product | purine nucleoside phosphorylase |
|---|
| Protein accession | YP_001762237 |
|---|
| Protein GI | 170728211 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0813] Purine-nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000380041 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCAC ATATCAATGC CGAAGCTGGC GCATTTGCAA CGACGGTTTT AATGCCAGGC
GACCCGCTAA GAGCTAAATA TATTGCTGAG AATTTCCTTG AAAATGCTGT CTTGGTGACC
GATGTGCGCA ACATGTTGGG CTACACAGGC GAATATCAGG GTAAGAAGAT CTCTGTGATG
GGTTCTGGTA TGGGCATTCC CTCTATCTCT ATCTACGCGA AAGAGTTGAT CACTGAATAT
GGGGTGAAGA ACATCATACG TATCGGCTCC TGTGGTGCGG TGAGTGATAA GATTAAGTTG
ATGGATGTAG TGATGGCCAT GGGGGCCAGC ACTGACTCAG CGATTAATCG CACTCGCTTT
GAACACACAG ATTTCGCCAT GATTGCTGAC TTTAACCTAC TAAGAAAAGC GGCCGATGCG
GCGGACAAAC TTAAGGTTAA CTACCATGTA GGCAATCTCT ACTCCTCTGA TCTTTTCTAC
AGCTCAGATG AAGCGCGTTA CGATCTGATG GAGAAGTACG GCATCTTAGG TGTCGAGATG
GAAGCTGCTG GTCTGTATGG TGTGGCTGCT GAGTATGGAG CTAATGCACT GGCGATGATG
ACAGTGACCG ATCATATCAG GCAGGGGCTG CATTTAACGG CTGAAGAGCG TCAACAAACC
CTTAATGAGA TGATCAAGTT AACACTTGAA GCAGTAAGCC AAGATCTTTA A
|
|---|
| Protein sequence | MTPHINAEAG AFATTVLMPG DPLRAKYIAE NFLENAVLVT DVRNMLGYTG EYQGKKISVM
GSGMGIPSIS IYAKELITEY GVKNIIRIGS CGAVSDKIKL MDVVMAMGAS TDSAINRTRF
EHTDFAMIAD FNLLRKAADA ADKLKVNYHV GNLYSSDLFY SSDEARYDLM EKYGILGVEM
EAAGLYGVAA EYGANALAMM TVTDHIRQGL HLTAEERQQT LNEMIKLTLE AVSQDL
|
|---|
| |