Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3644 |
Symbol | |
ID | 6117978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4437884 |
End bp | 4439302 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641635195 |
Product | major facilitator transporter |
Protein accession | YP_001762001 |
Protein GI | 170727975 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR00901] AmpG-related permease |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0893526 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCCAG TCGCTAGCTC ACCGCTTTCC CAAATAAAAG AAGCGCTCTC CATCTATAGC CATAAAAGGG TACTGGTTTT ACTCCTACTA GGTTTCTCAG CCGGCTTACC TTTAATGCTA GTATTCTCAA CCCTCTCTTT TTGGTTACGA GAAGCTGGTA TTGATAGAAC CGCAATTGGT TACTTTAGCT GGATTGCACT CGCCTACGGT TTCAAGTGGG CCTGGTCCCC CTTAGTCGAC AGACTCTCGC TGCCTATCTT CACCCGGCTA TTAGGTCGCC GACGAGGTTG GATGCTGTTT GCACAGATAC TGTTAGTCAC TGCAATCTTA GGCATGTCAT TTAGCGACCC CGTTAAGGAC TTGGAGCGCC TCGCTCTCTT CGCCTTAATG GTGGCTTTCG CCTCAGCAAC TCAAGATATT GTGATTGATG CCTTTCGTAT CGAATCTGCA CCAGAGAAGA TGCAAGCCGC ACTTGCTGCG GCCTATCAAG TTGGCTATCG CAGCGCCATG ATTGTCGCGA CAGCAGGTGC GCTCACCATT GCCGCTTGGG TAGAGCCAAG CAGTGATGCC TATAGTCTGT TGTCATGGCA AACCGCTTAC TTAATCATGG CAGGACTCAT GTCTGTGGGG ATTCTCACCA CGCTAATGAG TAAAGAGCCA CAAGTTGAAA CTAAGCTTGC CGATGAGAAA GAGTTGGCGA TTAAGAGTGA GTTTAATCAG CGCTATCCTA AAGCCATTGC AGGAACCCTA TCTTGGTTTT ACACCGCAAG CGTGCTGCCC TTTATAGATT TTTTTAAACG TTATGGACAT AACGCCATTC TCATTTTGCT GCTTATCTCC TGTTACCGGA TCTCAGACAT AGTGATGGGG ATTATGGCCA ATGTTTTCTA TGTAGATATG GGATTTGCTA AAGATGAGAT AGCTGCGATA AGTAAAGTCT ACGGTCTCAT TATGACCTTA GTCGGAGCGG GATTTGGTGG GGTACTACTC GCCCGTTATG GCACCATGAA GGTTCTATTT CTAGGTGCGC TGCTTGTGGC CGTGACGAAT TTACTCTTCG CTTATCAGGC CATGATTGGC TATAACGTGC CGTTTTTAAC CTTAGCCATC TCAGTCGATA ACTTCAGTGC AGGTATCGCA ACCGCCGCCT TTATTGCATA TCTATCAAGC CTAACCAGTA CCGGATACAG TGCGACTCAA TATGCTCTGC TCTCCTCAAT TATGTTGCTT TTCCCTAAGT TTATCGCAGG CTTCTCCGGT GCCTATGTCG ATACTTTTGG CTATATCAAC TTCTTTATCG CCGCCAGCAT CATAGGTCTT CCAGTACTTT GGTTAGTGCA TATCGTCGAT AAGCGAACGA AACATGACAG TGGCATGGTT GAGCAAACAG ATAAACAAGT TTACGAGCAG GAGCGATAA
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Protein sequence | MPPVASSPLS QIKEALSIYS HKRVLVLLLL GFSAGLPLML VFSTLSFWLR EAGIDRTAIG YFSWIALAYG FKWAWSPLVD RLSLPIFTRL LGRRRGWMLF AQILLVTAIL GMSFSDPVKD LERLALFALM VAFASATQDI VIDAFRIESA PEKMQAALAA AYQVGYRSAM IVATAGALTI AAWVEPSSDA YSLLSWQTAY LIMAGLMSVG ILTTLMSKEP QVETKLADEK ELAIKSEFNQ RYPKAIAGTL SWFYTASVLP FIDFFKRYGH NAILILLLIS CYRISDIVMG IMANVFYVDM GFAKDEIAAI SKVYGLIMTL VGAGFGGVLL ARYGTMKVLF LGALLVAVTN LLFAYQAMIG YNVPFLTLAI SVDNFSAGIA TAAFIAYLSS LTSTGYSATQ YALLSSIMLL FPKFIAGFSG AYVDTFGYIN FFIAASIIGL PVLWLVHIVD KRTKHDSGMV EQTDKQVYEQ ER
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