| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3562 |
|---|
| Symbol | nusA |
|---|
| ID | 6117894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4349577 |
|---|
| End bp | 4351076 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641635113 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_001761921 |
|---|
| Protein GI | 170727895 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.490076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000857333 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG AGATTTTGCT AGTCGCTGAG GCGGTTTCAA ATGAGAAAGG TGTTCCTCGC
GAGAAAATTT TCGAAGCGTT GGAAATAGCA TTAGCTACAG CCACCAAGAA AAAATATGAA
GGCGATATTG AAGTTCGTGT TCAGATCGAC CGTAAAACCG GTGGATATGA AACTTTCCGT
CGTTGGATGG TTGTTGAAGA CACGGGTGAG CCTTTAGAGA ACCCTTTTAG TGAAATAACA
CTGGAAGCGG CTCAGTTTGA AGATCCTGAG ATTCAACTTG GCGACTATAT CGAAGATGAT
ATTGAGTCAG TAGTATTTGA CCGTATTACG ACACAAACGG CTAAACAGGT GATCGTACAG
AAGGTTCGTG AAGCTGAACG TGCTCAAGTT GTTGATCAGT TTAGAGATAA AGAAGGTGAG
CTAATCACTG GTGTTGTTAA AAAGAGCAAT CGCGAAAGTG TTGTGGTTGA TCTTGGTAAC
AATGCTGATG CCGTGTTATT CAAAGAAGAT TTGATTTCAC GTGAAAGCTT CCGTCCAGGT
GATCGTGTAC GCGCTTTGCT ATATGCAGTT CGTCCAGAGG CACGTGGTGC TCAGCTTTTC
TTAACTCGTA CTAAGCCAGA TATGCTTATC GAGCTTTTCC GTGTTGAAGT ACCGGAAATT
CAAGATGAGA TGATTGAGAT CATGGGTGCA GCTCGTGACC CAGGTTCTCG TGCAAAGATT
GCTGTTAAAT CAAATGACAA GCGTATCGAT CCTATCGGTG CTTGTGTCGG TATGCGTGGT
GCACGTGTTC AGGCTGTATC AAATGAGTTA AATGGCGAAC GTGTTGATAT CGTGCTTTGG
GACGATAACC CAGCACAATT TGTTATCAAT GCCATGTCAC CTGCGGATGT CGCTTCTATC
ATCGTCGATG AAGATAACCA CTCGATGGAT ATCGCCGTTG AAGCGGATAG TTTGGCTCAA
GCGATTGGTC GCAATGGTCA AAACGTACGT CTAGCAACTC AACTTTCTGG TTGGGAGCTT
AACGTGATGA CTGTGGCTGA TATGCAAGCT AAGCATCAGG CAGAGAGCGC GAAGATCGTT
AACTTATTTG TTTCGGCATT AGAAGTTGAT GAAGATTTTG CTCAAGTACT TGCAGATGAA
GGTTTCACCT CATTAGAAGA GGTGGCTTAT GTTCCTGAAT CTGAGCTGAT GGAAATTGAT
GGTTTCGACG AAGAGATCGT TGAAGCGCTG AGAGAGCGAG CTAAAGCTGC AATCTCTACT
CGTGCACTTG CTTCTGAAGA AGCATTAGAT GGTGCAGAGC CAAGTGAAGA CCTACTTGCA
CTCGAAGGTC TAGAGAGACA CCTAGCGTTT GTATTAGCGA GTAAAGGCGT TATTACACTA
GAAGATTTAG CCGAACAAGG CATTGATGAC TTGATCGACA TTGAAGAATT GACAGAAGAA
AAGGCTGGTG AGCTCATCAT GGCAGCCCGA AATATCTGTT GGTTTGGCGA AGAAGCATAA
|
|---|
| Protein sequence | MNKEILLVAE AVSNEKGVPR EKIFEALEIA LATATKKKYE GDIEVRVQID RKTGGYETFR
RWMVVEDTGE PLENPFSEIT LEAAQFEDPE IQLGDYIEDD IESVVFDRIT TQTAKQVIVQ
KVREAERAQV VDQFRDKEGE LITGVVKKSN RESVVVDLGN NADAVLFKED LISRESFRPG
DRVRALLYAV RPEARGAQLF LTRTKPDMLI ELFRVEVPEI QDEMIEIMGA ARDPGSRAKI
AVKSNDKRID PIGACVGMRG ARVQAVSNEL NGERVDIVLW DDNPAQFVIN AMSPADVASI
IVDEDNHSMD IAVEADSLAQ AIGRNGQNVR LATQLSGWEL NVMTVADMQA KHQAESAKIV
NLFVSALEVD EDFAQVLADE GFTSLEEVAY VPESELMEID GFDEEIVEAL RERAKAAIST
RALASEEALD GAEPSEDLLA LEGLERHLAF VLASKGVITL EDLAEQGIDD LIDIEELTEE
KAGELIMAAR NICWFGEEA
|
|---|
| |