| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3525 |
|---|
| Symbol | |
|---|
| ID | 6117857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4301880 |
|---|
| End bp | 4303058 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641635076 |
|---|
| Product | trimethylamine-N-oxide reductase c-type cytochrome TorC |
|---|
| Protein accession | YP_001761884 |
|---|
| Protein GI | 170727858 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
|---|
| TIGRFAM ID | [TIGR02162] trimethylamine-N-oxide reductase c-type cytochrome TorC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTGGA TCATCAACAT TTGGCGCACA CTTACCAAGC CTGCCAAATT TCTTACCTTA
GGTTCGGTCA GTATATCTGC CTTCCTGATG GGTATTATCT TCTGGGGTGG ATTTAACACA
GCCTTAGAGG CGACAAACAC CGAAGAGTTC TGTATTAGCT GCCACAGTAT GGAAAGCATG
CCATACAAGG AGCTGCAGGA AACAGTACAT TGGTCTAATC ACTCAGGTGT TCGTGCAACC
TGTCCTGATT GCCATGTTCC TCACAACTGG AGCCGTAAAA TTGCTCGTAA GATGGAAGCA
TCTCACGACG TATGGGGCTG GATGTTACAA ACAGTCAATA CACCAGAAAA GTTTGAAGAG
AAACGCTTAG AGATGGCGAG CCGCGAGTGG AAACGCTTCG ATCGTGACAA CTCTCTGGCT
TGTAAAAACT GCCATAACTA CGACTCAATG AAGTGGGAAA GCATGTCTAA GCTGGCTCAA
AAGCAGATGA AACGCGCTGC AGAGCTAGAT CAAAGCTGTA TCGATTGCCA CAAAGGGATC
GCACATAAGC TACCAGATAT GGGAACATCA CGTGCGCCAG AGCTTATCGC TCAAGTTGGC
TCAGGTGAGA GTGCTCCTCA GGTCGAGCAA ACTTATTTCT CAGCATTAAC TAAACCACTT
TACTTCAACG AGAAAACAGA CGTTGAGGCA GGAACCCTAA ATATCGCCAC TAAAGTCAAG
GTGTTAGAGA CTAAAGGCAA CCGCGTTAAA ATTGGTATCG ATGGCTGGCG CAAAAAGATT
GGTGCAGGTC GTGTGATCTA CTTCGATTTC GGTCTTAACA TCCTATCGGC TCAACTAAGT
AAAGATGCCG CCCTTGAAGA GGGTGTAATG GAAGTGTTCG AAGAGAAAGA AGATCCATTA
ACAGGTCTTA AGTGGCAACG TGTTGAAGCT AAGATCTGGA CCGACAAAGA TTACTTGGTC
ACCGATCTAC AGCCACTTTG GGACTATGCT CGTGAAACAT ACAGCACAAG CTGTAGTGTA
TGTCACACCC AACCTGCCGA AGCACACTTC GATGCCAACA CTTGGCCAGG TATGTTCCAA
GGCATGATCG CTTTCGTTAA CATGGATCAG GATACTCAAG CGCTGGTACA GAAATACCTA
CAAGAGCATT CGTCTACTTT CGATAAGTCT GCGCACTAG
|
|---|
| Protein sequence | MKWIINIWRT LTKPAKFLTL GSVSISAFLM GIIFWGGFNT ALEATNTEEF CISCHSMESM
PYKELQETVH WSNHSGVRAT CPDCHVPHNW SRKIARKMEA SHDVWGWMLQ TVNTPEKFEE
KRLEMASREW KRFDRDNSLA CKNCHNYDSM KWESMSKLAQ KQMKRAAELD QSCIDCHKGI
AHKLPDMGTS RAPELIAQVG SGESAPQVEQ TYFSALTKPL YFNEKTDVEA GTLNIATKVK
VLETKGNRVK IGIDGWRKKI GAGRVIYFDF GLNILSAQLS KDAALEEGVM EVFEEKEDPL
TGLKWQRVEA KIWTDKDYLV TDLQPLWDYA RETYSTSCSV CHTQPAEAHF DANTWPGMFQ
GMIAFVNMDQ DTQALVQKYL QEHSSTFDKS AH
|
|---|
| |