Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3478 |
Symbol | |
ID | 6117810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4252643 |
End bp | 4254508 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641635031 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001761839 |
Protein GI | 170727813 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0957746 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0274929 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTGG ATATTTCTCA ATACCCTGTG CTTGCACAGG CTAATACCCC TGATGAGCTG AGACAGCTCC CTCAAGCCGT GCTACCACAA CTAGCAGACG AGCTTAGAGG TTTCCTATTG AAGTCAGTGG GCAAGTCAAG CGGCCATTTT GCCTCTGGAC TCGGCACAGT GGAACTCACT GTGGCACTTC ATTACGTCTA TAACACGCCG TTCGATCGCC TTATCTGGGA CGTGGGCCAC CAAGCCTATC CACATAAGAT CTTAACCGGA CGCCGTGATG CCATGCACAC CATACGTCAA AAAGGCGGAA TACACCCCTT CCCATGGCGT GAAGAGAGCG AGTACGACAC TTTTAGCGTG GGTCACTCAG GCACCTCTAT CAGTGCAGCG TTGGCCATGG CCGTTGCTGC AGAAAAAGAG CAAGCTGGAC GTAAAGTCGT ATCTGTTATC GGTGATGGTG CTATGACTGG CGGCATGGTC TTCGAAGCCA TGAACCATGC AGGCGATCTA CATAACGATA TGTTGGTCGT GCTCAACGAT AACGAGATGT CTATCTCTGA AAATGTCGGC GCACTCAATA ACCACTTAGC TCAGCTGATG TCGGGACGTT TCTATACCAC GATCCGTGAA AGCAGCAAAA AGGTACTCAA AGGGATGCCT GTCATCAAGG AGATGGCTAA GCGTACCGAA GAGCACTTAA AGGGCATGGT TGTTCCCGGT ACCATGTTTG AAGAGCTAGG CTTTAACTAC ATAGGTCCAA TCGACGGCCA TGATGTCGAT GCCCTCGTTG AGACCATGCG CAATATGCGT AACCTGTCAG GTCCACAAAT TTTACATATC ATGACCAAGA AAGGTCGTGG CTATGAGCCT GCGGAAAAAG ATCCTATTGG CTGGCATGCT GTGCCTAAGT TTGACCCATC CACTTTTGAG AAACCGGCGT CAAAGCCAAG TAACCCAACC TTCTCGCAAG TATTTGGTAA ATGGCTTTGT GATGTAGCCG AAAAAGATAA AAAAGTATTG GGGATCACCC CAGCTATGCG TGAAGGTTCA GGCATGGTTG AGTTCTCTCA GCGTTTTCCT AAGCAATACT TTGATGCGGC CATTGCCGAG CAGCACGCGG TGACTTTAGG TGCAGGTTTT GCCTGTGAAG GGTTAAAACC GGTTGTCGCC ATCTACTCAA CCTTCCTGCA GCGTGGCTAT GATCAGTTGA TCCACGATGT CGCGTTACAA AAGCTACCAG TACTCTTTGC TATCGATCGC GGTGGTATTG TTGGTGCCGA TGGGCCAACT CACCAAGGCG CCTTTGATCT CAGCTTTATG CGTACAGTAC CCAATATGGT CATCATGGCA CCTTCTGATG AGAATGAGTG CCGTCAGATG CTCTATACCG GTTACTGCTA TAATGATGGC CCAACCGCAG TGCGCTACCC AAGAGGCAGT GCTACTGGCG CTCCTCAAAT AGAAGAGATG ACTGCCCTAC CTATCGGTAA AGGTTTGATT AAACGTCAAG GCCAAAAGGT CGCTATTCTC AATTTTGGCA CGCTATTGGC CAGTGTATTA ACAGCAGGAG AGTCCCTTGA TGCAACAGTT GCAGATATGC GATTTGTTAA GCCACTGGAT GTCGAGCTAA TTAAAGAGTT AGCAAACTCC CATGACGTGC TAGTCACTGT TGAAGAAAAT GCCATCATGG GCGGTGCTGG CTCAGGTGTA CTTGAACTGC TACAACAACT TAAACAGCCA ATGCCTGTAC TCCAGCTTGG TCTTCCAGAT GAGTTTATTA AGCATGGTGA CTCAGGTGAG ATTATTGCTG AGCTAAAACT CGACGCCGCA GGCATTTTGG AGCAGATAGA GAGCTATTTA GCTTAA
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Protein sequence | MSLDISQYPV LAQANTPDEL RQLPQAVLPQ LADELRGFLL KSVGKSSGHF ASGLGTVELT VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDAMHTIRQ KGGIHPFPWR EESEYDTFSV GHSGTSISAA LAMAVAAEKE QAGRKVVSVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND NEMSISENVG ALNNHLAQLM SGRFYTTIRE SSKKVLKGMP VIKEMAKRTE EHLKGMVVPG TMFEELGFNY IGPIDGHDVD ALVETMRNMR NLSGPQILHI MTKKGRGYEP AEKDPIGWHA VPKFDPSTFE KPASKPSNPT FSQVFGKWLC DVAEKDKKVL GITPAMREGS GMVEFSQRFP KQYFDAAIAE QHAVTLGAGF ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ KLPVLFAIDR GGIVGADGPT HQGAFDLSFM RTVPNMVIMA PSDENECRQM LYTGYCYNDG PTAVRYPRGS ATGAPQIEEM TALPIGKGLI KRQGQKVAIL NFGTLLASVL TAGESLDATV ADMRFVKPLD VELIKELANS HDVLVTVEEN AIMGGAGSGV LELLQQLKQP MPVLQLGLPD EFIKHGDSGE IIAELKLDAA GILEQIESYL A
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