| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3354 |
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| Symbol | rumA |
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| ID | 6117686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4110519 |
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| End bp | 4111850 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641634910 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001761718 |
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| Protein GI | 170727692 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0093271 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000473524 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCACAGT TTTTTAAAGC AAAACCAAAC AGTTCAAAGC AACTTTCGGC GAAAGTATCA
CTCCAGGTCA CCCGATTGGA TCATTTGGGG GCTGGCATTG CTCAACATAA CGGCAAAGTT
GTGTTTATTC CCGGTGTATT ACCCGGGGAA AAAGCCATGG TTCAGCTCAC TGAACAGAAA
AAACGGTACT CAAGAGCGAA GTTATTGAAT CTTGAGACTC ACTCTATCGA CCGTGTTGAG
CCCAAATGTG CACATTATCA TCAATGTGGT GGCTGCGATC TTCAGCACCT TAGCCTTGAG
AAGCAACGAC TTCATAAAGA GTCTGCATTA GTAAGTTTAA TGGCGAAATT AAGCCACACT
GAAGCAGAAG CCTTAGTTCC AGCTATTATA GGCGAACAAT GGCATTATCG TCGCCGTGCT
CGTTTAGCTA CTTTTTATCA TCAAGAAACA AAGAGAACCA CATTAGGCTT TAGAGCTCAG
TCGAGTAAAG AGGTGATTGA TATCTCCTCT TGCCCTGTGT TAGCCAAATC TCTGTCTGAG
TTAATCTCGC CTTTATCTAA GCTATTAAAT CAACTGGCCA GTAGAAGAGC GCTGGGTCAT
GTAGAGCTTA TTGATGTAGA TAATGGTCAG TTTGTGGTGG TTAGAGCGAC TAAGGAGCTC
TCGGATAAGG ACAAAGAGAA GCTGCTCTCT TTTGCACAGG AGCATAAAGT TAATCTGATT
GTTCAGGGCA ATGAAGGTGA ACTCTTGGTA ATTAAAGGGC CAAAAGAGCT GCCTTTTTAC
ACATTAAACA GTGATATTAA ATTGAGCTTT ACACCGGGAA ACTTTGTTCA AGTCAATGGT
GAGATAAACA GAGCGATGGT TGATCAGGCG GTTCAATGGC TGGATGTAAA AGCTGATGAA
CGAGTGCTAG ATCTTTTCTG TGGTGTCGGA AATTTCAGTC TACCTCTAGC CAAATCTGGC
GCTGAAGTGA TCGGTGTAGA AGGGGTCCCT GAGATGGTGG CACAGGCCAG AATCAATGCT
AAGCAGAGTG ATTTGTCTGA TGTAACCTTC TTTCATACCG ACTTAAGCGC TGATCTCTCT
AAAGAGCCTT GGCTAGGTAA AGTAGATAAG TTACTGCTCG ACCCTGCAAG AGCTGGGGCG
TTTGAGAGTT TGCAATGGTT AAAGAAGATG AAACCTAAAT CAATTGTTTA TGTTTCTTGC
GATCCCTCGA GCCTAGCCAG AGACAGTGAG CCTTTGCTAA AGCATGGTTA TAAGCTTAAA
AAATTGGGCT TAGTCGATAT GTTCCCTCAA ACACATCACA TTGAGGCTAT GGCACTGTTT
GAGTTGAGTT AA
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| Protein sequence | MAQFFKAKPN SSKQLSAKVS LQVTRLDHLG AGIAQHNGKV VFIPGVLPGE KAMVQLTEQK
KRYSRAKLLN LETHSIDRVE PKCAHYHQCG GCDLQHLSLE KQRLHKESAL VSLMAKLSHT
EAEALVPAII GEQWHYRRRA RLATFYHQET KRTTLGFRAQ SSKEVIDISS CPVLAKSLSE
LISPLSKLLN QLASRRALGH VELIDVDNGQ FVVVRATKEL SDKDKEKLLS FAQEHKVNLI
VQGNEGELLV IKGPKELPFY TLNSDIKLSF TPGNFVQVNG EINRAMVDQA VQWLDVKADE
RVLDLFCGVG NFSLPLAKSG AEVIGVEGVP EMVAQARINA KQSDLSDVTF FHTDLSADLS
KEPWLGKVDK LLLDPARAGA FESLQWLKKM KPKSIVYVSC DPSSLARDSE PLLKHGYKLK
KLGLVDMFPQ THHIEAMALF ELS
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