Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3255 |
Symbol | |
ID | 6117574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3990193 |
End bp | 3991917 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641634799 |
Product | Na+/H+ antiporter NhaC |
Protein accession | YP_001761620 |
Protein GI | 170727594 |
COG category | [C] Energy production and conversion |
COG ID | [COG1757] Na+/H+ antiporter |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.208883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAGGA AAAACCAGAC AACAGCGCTT TTCATGCTGA TATTCGGCCT GTTAGCAGGT ATTTTTTGCC ACCACTATAT CGACAAGCAA TGGCTAGAGA GAGCTGTCAG CTATGAGCTT TATTCGAACC TCGATGGCCA ACTCGCTTAT AAATTCAAAG GCAAAGAGAT ACTCGTAGGA GAGCTAATCC CCTATCAACT CTCCCCTTTA TCCCAAGAAA ATCTAGATAA ACTTGAAACT GAGCCAAGTA TTGAACAGCA GTGGGTACAG GACTCTCAAG GTTCAATACG CTTACTCAAA CCTGCATTTC ACTTTGGAGT CTGGTCACTG CTACCCGCTT TCATTACTGT CTGTTTATGC TTACTCACCC GTGAACCCTT AATATCACTA TTGACTGGCA TCATAGTCGG TGCATTTATG CTGGGACAGT TCGATGTTAT CGATAAAGTG CTCATTCCAA ATTTAGCCAG CGAAGGGACG GCGGGCTTGT TACTGCTCTA TCTGTGGTTA TTGGGAGGAC TGTTAGGGAT CTGGACCAAG ACAGGCGCAG CACAAGCTTT TGCAGACTAT ATGGCCAAGC ATTTTGTTAA AGGACCTAAA AGTGCCAAAT TAGTCACTTG GCTTCTTGGG GTACTCTTTT TCCAAGGTGG TACCATGAGT ACCGTGCTTG TAGGCACAAC AGTGCGCCCT TTAGCAGATA AAGCCAAAGT GAGTCACGAA GAGATGAGCT ACATTGTTGA CTCTACCGCC TCCCCCATCG CAGCTGTGCT TGCTTTTAAT GCTTGGCCAG CTTATGTTCA AGCCCTCATC TTTGTCCCTG GTGTGGCCTT TCTTGCCACT GAATCAGATA GATTGAGCTT CTTTTTTAGC AGTATTCCCT TTAGTTTTTA CGGTATTTTT GCCGTATTAG GTACTCTTCT GCTCAGCTTA AACATCACCA AGTTTTCAGG AAAACGTATC CAACAAGCTC ACCAAAGAGC GGCAACAACC GGCGCGCTTG ATGCTCCCCA CGCTAGGCCT TTGAGTGCCA AAGAGCTACA AACAGTTGCA GTACCCGCCA ACTATCGATC CAATATGCTG GAGTTTGTTG TGCCCCTAGT CTGCCTAATT AGTATCGCAA TAGGCACTTT TATAGCCCTG GGGTCACCTA AAGTGAACTG GGCATTCACC GCTGCACTGT TACTTTCTGG CGGTATTGCG CTTATCAAAG GGATGAGCTT AAACGACCTC ATTGATGGCT TCGGTACTGG GCTTAAAGGC GTCGTACTCG CTTCAGTAAT TTTAATGTTA GCGGTGATCA TAGGTAGCAT TAGTAAGCAG ATTGGTGGCG GTCTATACCT AGTGTCACTG CTGGCCGAGC AATTACCCTA TTGGCTGGTA CCACTAACAT TACAGCTGAT CACTATGATC ATCGCTTTCT CTACAGGTAC CAGTTGGGGA ACTTACGCTA TCGCCTTCCC TCTTGCTATG CCTCTTGCAT GGGAGATATC TCAAGTACAA CAGCTGGCGA ATCCAGAGCT TTACTTAATG ATCTGTTTTG CCACTGTGCT AAATGGCAGT ATTTACGGCG ATCAATGCTC GCCAATCTCA GATACTACCG TGTTGAGCGC CATGACGACT GGCTGCGATC TTATGGATCA TGTAAAGTCC CAAATCGTCC CCGCGTCACT TGCCGCCGCC ATGGCGGCTA TCCTTTGGGC CGCATTAGTG TATATCTATG TTTAA
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Protein sequence | MMRKNQTTAL FMLIFGLLAG IFCHHYIDKQ WLERAVSYEL YSNLDGQLAY KFKGKEILVG ELIPYQLSPL SQENLDKLET EPSIEQQWVQ DSQGSIRLLK PAFHFGVWSL LPAFITVCLC LLTREPLISL LTGIIVGAFM LGQFDVIDKV LIPNLASEGT AGLLLLYLWL LGGLLGIWTK TGAAQAFADY MAKHFVKGPK SAKLVTWLLG VLFFQGGTMS TVLVGTTVRP LADKAKVSHE EMSYIVDSTA SPIAAVLAFN AWPAYVQALI FVPGVAFLAT ESDRLSFFFS SIPFSFYGIF AVLGTLLLSL NITKFSGKRI QQAHQRAATT GALDAPHARP LSAKELQTVA VPANYRSNML EFVVPLVCLI SIAIGTFIAL GSPKVNWAFT AALLLSGGIA LIKGMSLNDL IDGFGTGLKG VVLASVILML AVIIGSISKQ IGGGLYLVSL LAEQLPYWLV PLTLQLITMI IAFSTGTSWG TYAIAFPLAM PLAWEISQVQ QLANPELYLM ICFATVLNGS IYGDQCSPIS DTTVLSAMTT GCDLMDHVKS QIVPASLAAA MAAILWAALV YIYV
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