Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3164 |
Symbol | |
ID | 6117483 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3879541 |
End bp | 3881523 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641634709 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_001761530 |
Protein GI | 170727504 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGATCA AATCCAGTAT AAATCCTCCT GTGTTTTTCT CCTCTGTTTT TCTAATCGCG TTAATGGTGT TTGTTGGGGC TGTATGGCCT ACTCAAGCAC AAACCGTATT TAAGTCAGCT CAGTCTTGGT TCGAATTGAA AGCCGGTTGG TTGTATATTC TTGGCGTTGC TGTATTTCTG ATTTTTATTA TCTTTGTCAT GATGAGCCGA TTTGGAGATA TTAAGTTAGG TCCAGATCAC GCTGAGCCCG ATTACAGCTA TAAGAGCTGG ATCGCCATGC TGTTTTCAGC AGGCATGGGA ATTGGCTTGA TGTTCTTCGG TGTAGCAGAG CCTGTTATGC ATTATCTGGC GCCACCTGAT GCGACACCAG CGTCGATTCA AGCGGCTAAA GATGCCATGA AGATCACCTT CTTCCATTGG GGAGTCCATG CTTGGGCCAT CTATGCTGTA GTGGCGCTCA GTTTGGCTTA TTTCTCCTAC CGTCATAAGC TTCCATTGCT TCCACGTAGT GCACTTTACC CATTAATTGG TGAGCGGATC TACGGTCCAA TCGGTCATGC TGTCGATACC TTTGCGGTAT TAGGTACCAT GTTTGGTGTT GCGACCTCTT TAGGTTTTGG CGTACTGCAG GTTAACTCAG GTCTTAACTA TCTACTGGGC GTACCAGTGA ATACTTATAT TCAAGTTGGG CTGATTATTG CCATCTCCTT GATCGCGACA GTTTCGGTTT TCTCCGGTTT AGATAAAGGG GTGAAACGAC TCAGTGAGTT GAACCTTGGT TTAGCCGTTT TACTGCTTAT TTTTGTACTG ATATTTGGCC CTACGGTTGA GCTATTGCAA GCCTTTGTTC AAAATACTGG TAGCTATTTA AGCGATATCG TCGGCAAGAC GTTTAACTTA TATGCTTATG AGCAGAAAAA TGATTGGATT GGCGGATGGA CGCTACTCTA TTGGGGCTGG TGGATCTCAT GGTCCCCATT CGTAGGGACA TTTATTGCCC GCGTATCACG TGGACGTACA ATCAGAGAGT TCCTCGTTGG GGTACTGTTT GTGCCAGCGG CGTTTACTTT CCTCTGGATG ACGGTATTTG GTAATACGGC TATCGATGCG ATTATGAATC ATGGTGCGAC TTACCTTTCT GAAGCGGTAT CTTCGGATGT GTCCGTGGCG TTGTTTGTCT TCTTTGAGCA TATGCCGTTG TCTAATGTGT TATCCACTAT TGCCCTGTGT TTGGTGGTGA CCTTTTTTGT GACATCGTCA GATTCTGGCT CACTTGTGAT AGACAATCTC ACGTCGGGTG GCGATCATAA CGCTCCAGTT TGGCAGCGTG TATTTTGGGC CTTACTGCAA GGTGTTGTTG CATCTGTGCT TCTGCTTGCT GGTGGATTAC AAGCATTACA AACTGTTGCG ATAGCCAGTG CATTACCTTT CTTACTTGTG ATGCTATTAA TGTGCTTTGG TCTGTATAAA GCTCTAAAAG ATGATTGGCT TAAGATCAAT AGCGTGCAGT CTCATAATAC CAGTGTTCAG TTCACTAAAA CTGATGTGAA CTGGGAAGAT CATATTGATG TTCTGGTCTC TCATCCGAGT CAAAAAGATG CGCAAGATTT TCTTGATAAT GTGGCAACTC CAGCACTAAC TAAGGTGTGT GAGAGCTTTA TTAGTAAAGA GATCCCTGCT GAAGTGTTGA ATTTTGAGAA TCGAATTCGC TTTGTTATTG CCAATGAAGA GTATGATGAT TTTGCCTATG GTCTGCGTAT TCGTGCATTT ACTATTATCA ATCCAATCGA GAGTGAGGTT GATGGTGGTG AGACTGAATA CTACCGTGTT GAGGTGTTCC TTGAACATGG CGGTCAGCAT TATGATGTAA TGGGCTTTAA TCAAGATCAG ATCTTAGCCG ATGTTGTCAC TCAGTATGAG AAGTATCTGC ATTATCTGCA TTTAACTAAC TCTGAGTATG TGGGTGACGA GATTAACGCT TAG
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Protein sequence | MSIKSSINPP VFFSSVFLIA LMVFVGAVWP TQAQTVFKSA QSWFELKAGW LYILGVAVFL IFIIFVMMSR FGDIKLGPDH AEPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD ATPASIQAAK DAMKITFFHW GVHAWAIYAV VALSLAYFSY RHKLPLLPRS ALYPLIGERI YGPIGHAVDT FAVLGTMFGV ATSLGFGVLQ VNSGLNYLLG VPVNTYIQVG LIIAISLIAT VSVFSGLDKG VKRLSELNLG LAVLLLIFVL IFGPTVELLQ AFVQNTGSYL SDIVGKTFNL YAYEQKNDWI GGWTLLYWGW WISWSPFVGT FIARVSRGRT IREFLVGVLF VPAAFTFLWM TVFGNTAIDA IMNHGATYLS EAVSSDVSVA LFVFFEHMPL SNVLSTIALC LVVTFFVTSS DSGSLVIDNL TSGGDHNAPV WQRVFWALLQ GVVASVLLLA GGLQALQTVA IASALPFLLV MLLMCFGLYK ALKDDWLKIN SVQSHNTSVQ FTKTDVNWED HIDVLVSHPS QKDAQDFLDN VATPALTKVC ESFISKEIPA EVLNFENRIR FVIANEEYDD FAYGLRIRAF TIINPIESEV DGGETEYYRV EVFLEHGGQH YDVMGFNQDQ ILADVVTQYE KYLHYLHLTN SEYVGDEINA
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