| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3124 |
|---|
| Symbol | |
|---|
| ID | 6117443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3827925 |
|---|
| End bp | 3830150 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641634669 |
|---|
| Product | decaheme cytochrome c |
|---|
| Protein accession | YP_001761490 |
|---|
| Protein GI | 170727464 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00184772 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000042193 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAC AGTTCAATTT TAATGCAGCG ACAAAAGCTG TGTTAGGTGC AGGACTTCTC
TCTTTTGCTC TGATCGGTTG CGGCAGCGAC GGTGATGATG GCTCAAACGG AGAAGATGGT
ATTATCGGTG TTAACATCGA TTCAGCAAAA AGTGTCAATG CCGTTTTTAC AAGCGCTAAA
GTAGAAAATG GTGCCGTATT CGTTGATTTT AAACTTGAAG ATGGTAATGG CGTCGCTGTA
TTAGGCCTAA CCAAAGATCA CGATCTACGC TTTGGTATCG CCCAACTGAC CCATGAAGTG
CGCACTTTTG GTGAAGGCGA AGAAGCAGTT GAGTTCGATC GTGGCTTCCA GTGGCAAGCG
TATATCAACG CAGAAAAAAC ACCAAATGAA GACTGGATCC CCGATGGCGA AACAGACATC
AATCCATCAA ATCAATTCCA AGCTAACGTA GAAAAAGCGT CTAGCTGTGA AACCTGTTTT
GTTGATAATA AAGACGGCAC ATACAGCTAT ACTTTCCAAC AAAATGTCTC AGGCGTAACT
TCTCCAGTAG AGGTTGTTTA CAGCGCTGAA AATACACAAC GTGCCACACT GGAACTTGAG
CTGCCTTCTT TTGCAGTCAA TGCCCACTTT GACTGGCAAC CATCTACTGG CTTAACTGAA
GATATTCAAA GCCGTGATGT GGTTTCTATC GATGCATGTT ATACCTGTCA CCAGCCTGAT
AGCATAGCAT TCCACGGCGG ACGTCGTATC GATCTTGAAA ACTGTGCTTC TTGCCATACT
GGCACCTCTG GCGATCCTGA AACAGGTAAC AGTGTAGATT TCACCTATAT GATCCATGCG
ATCCATAAAG GTGATGCTCG TACAACTTAC GCCCCAGATT CACCAGACGC TGATGAGAAA
GGTAATATTC CAGCACCATA CAAGGTGATT GGATATGGTG GTGGCGTACA CGATTATGGC
AAGGTGATGT ATCCACAAAA GCCAGCTGCT GATTGTGCCG CTTGTCACGT TACAGGTGAG
AACGCCCCAG CTGATGCAGA GTTGTTCCTT GCTAACCAAA GCAATACGGC TTGTATCGCC
TGTCATACCA CTATGCCAAA AGCCTATCAT GACCCAAGCG ATGAAAACTG TATCTCTTGT
CATATCGAAG AGGGTTACGC ACGTAGTGGC GCAGAAGCTC ATGGCGATGC GACTAAGCGT
TACAAGGCAA GCCAAGATTA TTCAGCTAAA TTTAGCAATA TCAAAGTTGC AGGCGATGTG
TTGACTTTCG ATGTGCAAAT TCTTAACGAA AATGGTGAAC CTGTAGCAAA AGAGTTTATC
GCAAACCCTA GTAAATATAC TAAGTCTAGC GTTTACTTCT CTTGGGATAC CGATAAGGAT
TACCCGGCGT ACACTGATGG CACTAAATAC AGTGCACGTG GTTTCGCGCT ATTAAACCCT
GACGTATCAA GCTACGATCC AGCAACAAAG ACATTCACCA TTGATAGCAC CAAGAGCGCG
CTTGAGCTTC CAGCTAACTT AAATGGTAAG AGTGTTGAGC TATTTGCTGG TGTTGCAACT
TGTTTCAAAG CCGGTGGTTA TGGTCGTCCA ACTGTTGAGC CTACAGCTTG TCAATATGAC
GAAACTGATC CAACTAAGCT TCTAACCGAC GCCGCTTATA TCCAAGATGC TCCGTTAGGC
TTTACTTGGA ATGATACTGA CACCAGTGAG CCAGCAAAAG CTCGTCGTGA CATTATCGAC
AGCAGCAAGT GTATGGGATG TCACAATCAA GAGATCGTTC ACTATGACAA CGGCGTGAAC
TGTCAAACAT GTCACACTCC GGACAAAGGA CTCAATAAGT GGGGTGGTAA TGTACCAACT
AGCTTCGCTT ATAAAGCTCA CCATGCAGAA GGCCACTACC TGAAGTATGC TGGTGTTGGT
TCAAGTACTG TTGTTAAGAC AGATTGTAAA ACATGTCACA CAGACAGCGG TATCGAGCTA
GGTCGCTCTC CTGACCGTGC ATGGCGTTAC GGTGATGCTG ACGGTAATGA TATCTGGGTA
TCATCAGATG CTGGTGCATG TTTAAGCTGT CATCAGAAGT ACTTAAGTGA CTCAGGCAAG
GCACACATCA CCACTAATGG TGGTATCTTA GATGGTGTTG ATGCTGAAGA TGTGCAAAAC
CGTGCTAAAG AAGCTTGTTC TACTTGTCAC TCTCCAGAGA AAGTGATGGA GTTACACGGA
CACTAA
|
|---|
| Protein sequence | MMKQFNFNAA TKAVLGAGLL SFALIGCGSD GDDGSNGEDG IIGVNIDSAK SVNAVFTSAK
VENGAVFVDF KLEDGNGVAV LGLTKDHDLR FGIAQLTHEV RTFGEGEEAV EFDRGFQWQA
YINAEKTPNE DWIPDGETDI NPSNQFQANV EKASSCETCF VDNKDGTYSY TFQQNVSGVT
SPVEVVYSAE NTQRATLELE LPSFAVNAHF DWQPSTGLTE DIQSRDVVSI DACYTCHQPD
SIAFHGGRRI DLENCASCHT GTSGDPETGN SVDFTYMIHA IHKGDARTTY APDSPDADEK
GNIPAPYKVI GYGGGVHDYG KVMYPQKPAA DCAACHVTGE NAPADAELFL ANQSNTACIA
CHTTMPKAYH DPSDENCISC HIEEGYARSG AEAHGDATKR YKASQDYSAK FSNIKVAGDV
LTFDVQILNE NGEPVAKEFI ANPSKYTKSS VYFSWDTDKD YPAYTDGTKY SARGFALLNP
DVSSYDPATK TFTIDSTKSA LELPANLNGK SVELFAGVAT CFKAGGYGRP TVEPTACQYD
ETDPTKLLTD AAYIQDAPLG FTWNDTDTSE PAKARRDIID SSKCMGCHNQ EIVHYDNGVN
CQTCHTPDKG LNKWGGNVPT SFAYKAHHAE GHYLKYAGVG SSTVVKTDCK TCHTDSGIEL
GRSPDRAWRY GDADGNDIWV SSDAGACLSC HQKYLSDSGK AHITTNGGIL DGVDAEDVQN
RAKEACSTCH SPEKVMELHG H
|
|---|
| |