Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3104 |
Symbol | |
ID | 6117420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3802577 |
End bp | 3803467 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641634646 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001761470 |
Protein GI | 170727444 |
COG category | [V] Defense mechanisms |
COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0757763 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000231054 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCTCAAA TTAAGATCTA TCAGGGAGAT GAGATCCCCT CCCCCATGCT CAAGATCTGG CACACTTTTG CAGATAATCC ATTTGCATTT GCTGGTTTAT GGGCTGTTGT TGGTTTTCTT CTACTGGCCG TTTTTGGTCC GTTTATCGCA CCCTACTCAC CTGAACACCA AGATCCCCAT GCGCTACTTC TAGCGCCATC TTGGGATCCT GCAGGGACAG TCGAACACTT TCTTGGAACC GACGATCTAG GTAGGGATAT CTTTAGCCGT CTCCTTCATG GCGCGCACCT CACCTTTGGT GTAGCACTCG GAATTGTATT GACCTCACTG GTACTTGGTT TCATCATAGG TTCAATCTCC GGCATGATGA AAGGGCTAAA ATCCAGTATT TTGAGCCATC TTCTCGATGC TCTACTCTCT ATTCCCTCTC TGTTAATGGC TATCTTGGTT GTGGCTGTTA TGGGTCCGGG ACTTAATAAT GTATTTTGGG CGGTGGGGAT CGCACTGACC CCCCAGTTTG TTCGTGCCAT ACATCAAGCG ATACATGAAG AACTTCAAAA AGAGTATGTC AAAGCGGCAA AACTTGATGG TGCTAACCCC ATTCAGATAT TTTGGTATGT CATCATGCCA AATGTCTGGG ATACGGTTAT CATCCAAACG ACCTTAGGGA TCTCTGCGGC GATATTGGAT ATTGCTGCGC TAGGCTTTCT AAATTTAGGG GCTCAAGCAC CGAGTCCAGA GTGGGGGGCG ATGGTATCTC AGGGAATGGA TAACATTTTA ACAGCGCCTT GGACTGTAAC AATTCCAGGT GTAGCCATTC TGTGTAGCGT TCTTGCAATT AATTTAGTCG GTGACGGCTT ACGGTCGGCA CTGTCGCCGA TCAATAACTA A
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Protein sequence | MPQIKIYQGD EIPSPMLKIW HTFADNPFAF AGLWAVVGFL LLAVFGPFIA PYSPEHQDPH ALLLAPSWDP AGTVEHFLGT DDLGRDIFSR LLHGAHLTFG VALGIVLTSL VLGFIIGSIS GMMKGLKSSI LSHLLDALLS IPSLLMAILV VAVMGPGLNN VFWAVGIALT PQFVRAIHQA IHEELQKEYV KAAKLDGANP IQIFWYVIMP NVWDTVIIQT TLGISAAILD IAALGFLNLG AQAPSPEWGA MVSQGMDNIL TAPWTVTIPG VAILCSVLAI NLVGDGLRSA LSPINN
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