Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3085 |
Symbol | |
ID | 6117400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3780438 |
End bp | 3782861 |
Gene Length | 2424 bp |
Protein Length | 807 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641634627 |
Product | DNA polymerase II |
Protein accession | YP_001761451 |
Protein GI | 170727425 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000404512 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000370941 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTAGAG AAGAGTCCCT CCCAGCGAGT GTTAAAGGCA GAGTGCTATC ACGGCATCTG GTGCAACAAT CGGGCGCTCT TTGTCTGCAT TATTATATTA AAACAGCACA GGGGCCTGTG TTAGTGAAGG TGCCGAATGC TGAGTTTCTC TGTTTCTGTG CAACCTCTAG CGTTGATAAG TTGCTCTCTT CGCCAGGCTT AGGTTATGTG AGAACCAAGG CGCTGACTCT TCAGAACTTT GAATCCCAGA GTGTGACAGC ACTTTATTGT CAATCACGGC AAAACTATCG GAATTTGACC CGAGCTGGTG TTGATCTTGG GATCCCACTT TATGAATCTG ATGTTCGTCC TGAACATCGA TACCTCATTG AACGGTTTAT TGCGCTGGAT GTTGAGTTCT CCGGTGAGTT TATATCAACC CCGTCAACTG ATGCTTTACC TGTTTTTATG GCTGAGCGTG CTCGTAAAGC TGAGCTGGAT ATCTCACTTA ATGCTATCTC ATTGGATTTT GAGTGTAGTT TCGACGGAGA GCTTTACTCA GTGGGCTTAT ATGGGATGAG CGGCGAGCAG CCCTATGAGA AAGTCATTAT GGTCGGGGAT GCAAGCGCTA TAACACAGAG TGCAACGCCT GAGACAGATG AGAAAAGTAA GGCGGCAGCT TATGTCGAGT GGGTACAAGA TGAACGAGCA CTCATTCTCG CCTTGGTCGA GTGGTTTAAT GATTATGATC CCGACATTAT TATCGGTTGG GCCGTGGTTA CCTTTGACCT TGCTCTGCTG TTTCGCCGAG CTGAAAAGCT AGGGATAAAA TTGCCCATTG GCCGAGGAGG GGAACAGCTT AGCTGGAAAG TTGCCGATAA ATTCAGGCCT GAATCCCTTT CATTGCCTGG GCGAGTCGTA TTAGATGGTA TCGATTGGCT TAAAGCTGCA TTTTATCGTT TTGATAGTTT CTCCTTGGAA TCTGTATCTC GTACCTTGCT CGATGAGGGC AAGGCTATCC ATAGTGTTGA GCACCGTGTC GATGAGATAG CTCAGTTATT TGCGCATGAT AAGTTAGCGC TTGCACACTA TAACTTGACC GATAGCAGAC TCGTGTGGGA CATCTTTAAT CATACTGAGT TGTTTGAGTT TGCTATTGAG CGCTCAAAGC TAACAGGTTT AGAGCTCGGG AGAGTAGGGG CCTCGGTCGC TGCTTTTAAT AATTTGTATC TACCGCATCT GCATCGTGCA GGTTTTGTAG CGCCAGCCAT GGCGACTAGC CAAGGGTTAG AGAGTCCAGG TGGTTATGTG ATGGACTCTA TTCCTGGCTT ATACCAAAAT ATTATTGTGT TGGATTTTAA AAGTCTGTAT CCCTCAATTA TTCGTACCTT TCTTATTGAT CCTAAGGGGT TAGTGCAAGG CTTGTCTCTG CCAGACTCTG ATACCGTTGC AGGTTTTCGT GGTGGAAGGT TTAGTCGAGA TAACCCCATA CTTCCTCAAC TCATTAAAAC CTTATCTGAG CACAGAGAGT TGGCGAAAAA GGAGAGTAAT GCACCGCTGT CTCAGGCCAT TAAGATCATC ATGAACTCGC TTTATGGGGT ATTAGGTTCA AGAGGTTGTG TATTTCATGA TGCTAGGTTA GCAAGCTCCA TTACATTAAG GGGCCATGAG ATCATGAAGC AAACTAAGGT TTGGATTGAG GAGTGCGGAT ATAAGGTTAT CTATGGTGAT ACTGACTCTA CCTTTGTTTG GTTGGGTAAT GACCCACTTG AGGTCGATGC TGATACCGCC GCTAAAGGCT TAGTGGAGAT GGTGAACACT CACTGGCGTG AAAGGTTATT AAGCTCAATG AATATTGAGT GTTTCTTGGA GCTTGAATAT GAGTCCCATT ATGAACAGTT TTTTATGCCC ACATTAAGAG GTTCTACTGA GGGGTCTAAG AAGCGTTATG TTGGCGCTTA TACTCAGCAA AGTGGCGAGT TGAAATTAGT ATTTAAAGGG ATGGAGCAAG TGCGAAGTGA TTGGAGTCCA ATTGCAAGGC GAGTTCAAGA GTCACTGTAT TATCGTCTTT TCTCCAAACA GGATGTGAAG TTGTTTTTGC AGAGTATCGT AGAGGAGTTA TTGTCAGGAA AGCTTGATTC AGAGCTTATT TTTTCTAAGA AGCTTCGCAG AGATATTAGT GATTACAAGG CCAAATCTTC ACCACATGTT AAAGCTGCGC AGATCCAATA TGAGTTATCT GGTAATACGA GCCTCTCTAA AAGAGGGGCG CAAATTGATT ATTTAATGAC AGTAAATGGC GCTGAACCTG TGGAATACAG AAAATCCAAT ATCGACTATC AATACTATAT CGAGCGGCAA TTGGGGCCGA TAGCTGATCC CATTCTTACC ATTTTGGGCG AAAGTTTCTC TAGCATGAAC TCAAATCAGC TTACGTTAAT ATAG
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Protein sequence | MSREESLPAS VKGRVLSRHL VQQSGALCLH YYIKTAQGPV LVKVPNAEFL CFCATSSVDK LLSSPGLGYV RTKALTLQNF ESQSVTALYC QSRQNYRNLT RAGVDLGIPL YESDVRPEHR YLIERFIALD VEFSGEFIST PSTDALPVFM AERARKAELD ISLNAISLDF ECSFDGELYS VGLYGMSGEQ PYEKVIMVGD ASAITQSATP ETDEKSKAAA YVEWVQDERA LILALVEWFN DYDPDIIIGW AVVTFDLALL FRRAEKLGIK LPIGRGGEQL SWKVADKFRP ESLSLPGRVV LDGIDWLKAA FYRFDSFSLE SVSRTLLDEG KAIHSVEHRV DEIAQLFAHD KLALAHYNLT DSRLVWDIFN HTELFEFAIE RSKLTGLELG RVGASVAAFN NLYLPHLHRA GFVAPAMATS QGLESPGGYV MDSIPGLYQN IIVLDFKSLY PSIIRTFLID PKGLVQGLSL PDSDTVAGFR GGRFSRDNPI LPQLIKTLSE HRELAKKESN APLSQAIKII MNSLYGVLGS RGCVFHDARL ASSITLRGHE IMKQTKVWIE ECGYKVIYGD TDSTFVWLGN DPLEVDADTA AKGLVEMVNT HWRERLLSSM NIECFLELEY ESHYEQFFMP TLRGSTEGSK KRYVGAYTQQ SGELKLVFKG MEQVRSDWSP IARRVQESLY YRLFSKQDVK LFLQSIVEEL LSGKLDSELI FSKKLRRDIS DYKAKSSPHV KAAQIQYELS GNTSLSKRGA QIDYLMTVNG AEPVEYRKSN IDYQYYIERQ LGPIADPILT ILGESFSSMN SNQLTLI
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