Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3057 |
Symbol | |
ID | 6117372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3742314 |
End bp | 3743483 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641634599 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001761423 |
Protein GI | 170727397 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0161665 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0111828 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAACAG TGCTATTTAA CACTCACGAT CTCGTACTAC TGTTCACCTT ATATCAGTGC ATTTTATTTG GGCTTTGTCT GCTGACATTT AAGAAAGGCA ATAAGCTCAG CCATCTGTTA TTAGCGCTAT TTCTATTCAG TTACGCTGCG ATTCCACTCG ATACATTAAT TAACTACGGC GAAGCATTTC GCAGTTATGC CTTAGAGGTT TCAGTCAATT TATTCTATCT GTTTGGTTAC GCCTACTGGC TTGAAGCCGT ATTTTTATTA TTCTATGTGC GTTCATTGAT TTATCGTGAT TTTCGCTTCA AACCTCAGGA CTTGCTATTT TTACTGCCGC TAGTACTGTA TTTTTTCTAC CACCTAGATA CTTGGTACTG GCTGTCTGAT AATGAAAAAA TGCTGCAGCT ACAACAAAAC TATGCCGGTA ATGAAGCTAT TTCACAGCGT TTCATTGGCT TAGGACGGGA ATGTTTTCGA TTGTTTTGTG CAATCTTATG TTTCGTCGAG CTAAGGCGCT ATCAATCAAG GCTGAAAGAT AATTTTGCAA ACTTAGAAAG CGTCGACTTG AACTGGTTAG CTATCTTAGT GATAGGATTT CTATTTATTC GTGCTGATGC GATTTTAGTG TCTCTAGCCC TGTTTTCATC ATTTGAGTTT AACCATCACA TTGACTATGA ATTACTCGGG CTAATTTCCA ATTACACAGT ATTGATTTTG GTAAGCGTGC TCATCTTCTT CAGTTTACGC TTTCAAACTG GTCTTAGCGG CATTTGGCAA CAACAGCGAA CCGTCGACTC AGGGGCTAAA TATGAGAAGC AACAACCTGA TGAGTCGAGC ATCGCGCAGA TCAAAGCTTA CATGCAACAA CACAAACCCT TTCTTAATCC ATTACTCACC TTAGATAGCC TTGCTTCACA ACTGCAACTT TCCCCGCGGG TGCTATCGCA AATTATCAAT CGCCACTTCG AACAGAACTT TTTCGAGTTT ATTAATCAAT ATCGCATTAG TGAAAGTCAG CGCTTGCTTA GCGATGCCGC TCTAAAACAC ACTACGATCA TAGAGATCAT GGATAGATCT GGCTTCAACA GTAAAGCGAC CTTTAATACT CTATTTAAAA AACGTTTAGG TAAAACCCCG AGTCAATATA GAAAACAGCA ACTGCAGTAG
|
Protein sequence | MKTVLFNTHD LVLLFTLYQC ILFGLCLLTF KKGNKLSHLL LALFLFSYAA IPLDTLINYG EAFRSYALEV SVNLFYLFGY AYWLEAVFLL FYVRSLIYRD FRFKPQDLLF LLPLVLYFFY HLDTWYWLSD NEKMLQLQQN YAGNEAISQR FIGLGRECFR LFCAILCFVE LRRYQSRLKD NFANLESVDL NWLAILVIGF LFIRADAILV SLALFSSFEF NHHIDYELLG LISNYTVLIL VSVLIFFSLR FQTGLSGIWQ QQRTVDSGAK YEKQQPDESS IAQIKAYMQQ HKPFLNPLLT LDSLASQLQL SPRVLSQIIN RHFEQNFFEF INQYRISESQ RLLSDAALKH TTIIEIMDRS GFNSKATFNT LFKKRLGKTP SQYRKQQLQ
|
| |