| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2989 |
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| Symbol | |
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| ID | 6117304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3662131 |
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| End bp | 3664017 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641634531 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001761355 |
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| Protein GI | 170727329 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.542118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.107456 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCAATA GAACAGGCCT TTTACTATTA AGCTTTTGTT TATTAATCCT TTTAACCACC
ATTTCGGTCG TAAAAGCTGA TGATTACAAC ACTATTGAGA AGGTGCTAAC TGAATTAGAG
AGTGGGACAA CCATCCCTCA AACTGAATTA ATCGAAAAGA TAACCTACCT AAAGAACCAA
TTATCCGAAC GAGATAGCAG CTATTATCTT AGGCTTCAAG CTATTATCTG CTGGAACTAT
GATGTTGACG ACCCAAAACA GAGAGCGCTT GCCATCAGTT TTGCCAACAA GCAACTCAAT
AATCCTTTTA TTCAACAATC ACCTGAACAT CATCTGGATA TTCAACTCTG TAAAGCCTGG
TTTAATCAAA TAGATGGCAA GGTTACACAA GCATTAAAAG AGTATGATGA GATCATTCAA
CGAGCCTATC AGATAGAGTC ACTGAAGCTT ATCGCCGATG GACGTAGCAT TCGCGGCGCC
ATGTACTCAT TTCAAGGAAA CTTCTCTCTC GCTCTTGAAG ATCTTATCAC TGCACAGCAT
CTTTATGACA ACTTAGGCCT TAACCACTGG AGTCAAATAA ACCTGTCAGA TCTCGCCACC
AGCTACCGAC GTTTCGGTGA TCCCCAAACC GCGATAAAAT ACTATAAACA GCTTGAAGCT
AGGTTCATTA AACTCAATGA TATGGACGCA GCCACAGCCA TGATCACTGA GATGGCCATC
GCTTACGAAG AGTTGGGGGA ATATAATAAG GCGATAGAAT ACTATCAAAA ATCCTATGAG
TACTGGCAAA AACAGGGAGA CATTTTTAGC GCATCGACTA TCGCGGTTAA CATCTCAGGA
AGCTTAATTA AACTCAACAG AATAACTGAG GCTCAAGAAT ATTTATCTCA AGCCAGTCCC
CACATAACCT CAAAAGATGA AGCCTTCTAC AGTTTTATGA AGCTTTTTGA GGCTGAAATT
AGCTTAATAG ATGAGAAACC AAGTGAAGCA CTCAACGCAC TCTTAGAAGC AAAGTCAGCT
TTTAATAGAG TAAAAAACAA ACGAGGTTTA GCCCAGTTAT CACAGATTGA AAGTCAAGTT
TATACCTCAC TAGGCGACTG GCCAAAAGCG CTTCAGGCAT TACAAAGATA TGTGCAACTG
CACAATGAAC TTGACGCAAA AATGCAATCA AATCGCACGA CAGAGATGCG AACACGTTTT
AATACCGAAC AGATTGAGAC TGAAAATAAA CAACTTATCG AATTACAAAA AGCGAGAGAG
CTTGAACTAC ACATTCTTGA GCAAAATCGA TACCTTCAAT TTACTGTGAT TATACTGGCC
GTTATCGTGA TCCTTTTTGT CTCACTCTTT GCTATCAAAC AGGTACAAAA GTCTAAATTA
TTAGCGGTAC TGGCATTAAC CGACCACCTG ACTAAGCTCC CAAACCGTAG ACAAACTTAT
TCAGAAGCAG AGAAACACTT TTCAAATAAT AACAGTAAGT TATCCCTGAT ACTGTTTGAT
GCGGATCACT TTAAGAAGAT CAATGATAAT TTTGGTCATG AGATTGGAGA TAAAGTACTG
TTTGAACTGG CCAATATCAG TAATCTAATG ATGAGAAGAG CCGATCTTGT CGGACGAGTC
GGTGGCGAAG AGTTTCTTAT TATTTTGCCC GACACTTCGC TTGAACAGGC CATAAAAATC
GCTAATAGGT TAGTGGAGTC GATCGCAAAA ACTGATCTTT CACATTTGTC TCCCACATTG
TCTATATCAG TCAGTGCGGG AGTGGCGGAA AAAGAGCAAG ATGCCTCCTT CACTGAGCTA
CTTAATCGGG CAGATACAGC ACTTTACCAA GCAAAAACCA ACGGCAGAAA TCGCGCTGTC
TTTAATACTC AACAAACGGA TCAGTAA
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| Protein sequence | MINRTGLLLL SFCLLILLTT ISVVKADDYN TIEKVLTELE SGTTIPQTEL IEKITYLKNQ
LSERDSSYYL RLQAIICWNY DVDDPKQRAL AISFANKQLN NPFIQQSPEH HLDIQLCKAW
FNQIDGKVTQ ALKEYDEIIQ RAYQIESLKL IADGRSIRGA MYSFQGNFSL ALEDLITAQH
LYDNLGLNHW SQINLSDLAT SYRRFGDPQT AIKYYKQLEA RFIKLNDMDA ATAMITEMAI
AYEELGEYNK AIEYYQKSYE YWQKQGDIFS ASTIAVNISG SLIKLNRITE AQEYLSQASP
HITSKDEAFY SFMKLFEAEI SLIDEKPSEA LNALLEAKSA FNRVKNKRGL AQLSQIESQV
YTSLGDWPKA LQALQRYVQL HNELDAKMQS NRTTEMRTRF NTEQIETENK QLIELQKARE
LELHILEQNR YLQFTVIILA VIVILFVSLF AIKQVQKSKL LAVLALTDHL TKLPNRRQTY
SEAEKHFSNN NSKLSLILFD ADHFKKINDN FGHEIGDKVL FELANISNLM MRRADLVGRV
GGEEFLIILP DTSLEQAIKI ANRLVESIAK TDLSHLSPTL SISVSAGVAE KEQDASFTEL
LNRADTALYQ AKTNGRNRAV FNTQQTDQ
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