Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2904 |
Symbol | |
ID | 6117219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3551569 |
End bp | 3554040 |
Gene Length | 2472 bp |
Protein Length | 823 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641634448 |
Product | hypothetical protein |
Protein accession | YP_001761272 |
Protein GI | 170727246 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03502] extracellular lipase, Pla-1/cef family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000289565 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.061749 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAGAC TCTTTTTGGG TGTTGCAATT GCATCTGCGC TTGGGCTGAC GGGATGTAGT GAGGATAGTG TTGAAGAAAT TAAAGATAAG GTAGAGCCTC TAATCCCTGT GTCACATTTG GCTTTTGATC CTGCAAATGG CGTGGTACCT CTGCCAAATG ATCTTCTTTT TAGTGGTACC AGTGACGGTA CACTTAATCT GCCAGGTGAG GCAGCTGACG GAAGCAGTGA TTATACCGAT CCTACAATGG CACTAGGTGC GTTAGATGGT TGGTCTACAA CATCCCCAAT CTCAATTACA GTAGAGCCTG CAAGTGATCA TGATGGTTCT GTGTTGTCAT TAGATGTTAC CTCTGTGTCA CAACCCGGCG CGGTGAGAAT GTTTGAAGCA ACCGTGGGTG GTGCACTTTC AAGCGACCCT GAGTGTCAGG CTGCAACTTC AGTAACAGCG TGTAAAGTCG GTGAAGAACT TCAGTATGGC GTTGACTTTA TATCAACAGG TTCAGGTAAT ACGATTGCTA TTATTCCGCT TAAACCACTT AAGCCAAATC AATCTTACAT CTACGCGACC ACTAACCTTA TTATGGACTC AGAAAAACGC AGCATAGCGC CATCGACAAG CTATGGTCTG CTAAAGCTTG ATTTTGAAAC TGAGACTTTG GAAACTGACG ATCAGAAGCT GTTGCAAGAG ATAGTTAACA GTTATGAGAA AGGCATGGCT GCAGCTCACG GCGTCGATGC TGAGTCGATC ACCTATTCAG GACTGTTTAC TACTCAATCG GTTGCCGATG TCTATGAGAC GACTAAGCTA CTGATGTTAG ATCCAACTCC AGGTAACCCG TTTGCACCTT CAATCTCCCT TCCGCAGCCT CACCCTCTAG GGATCACGGT TGCGCAAGCG GCAGGTTTGA CTCCTGCTGA TGGCGTTGCA TATGCGGTGT CGAGTTTAGC GGATGTTTAT ACTGCTGAGC TGACTATCCC CACCTTTGGT GCTTGTGATT CGACAAAGTG TTCAGGTATT AGTGGCTCAT GGAAAGCATT GGGCGATAGC CCGGTATCTG TACTGCTTGC ACTTCAGGCG GGGACGTTAA GCCAAACAAA CTTTGGAATG CAAGCTGCGG CTTACAATAT TGACCCTGCA GCTGCATTAG CTAATCCTGC ATTATTAGCG GGGAAAACTT GGTTACTGGA TGATGGAACT GCTGCTGATA AAGCAAAGCA CTTGACCAAA TTTAACCCTA TTCCACAACC TACAGGGCAA GAGGTTGTTC CTGTTCTCAT CTCTATGCCT GATGCTGAGC GAGTTGCACA GTTTAGTGCT AGTCAGGGGC TGGATTTCAC ACCACCTACT GCAGGTTGGC CAACCACCAT TGCTATGCAT GGATTAGGTG GCGGTAAAGA GATGTCTCTT GCTTATGCTG GCTCTTATGC TGCATTAGGA GTGGCAACTA TCGCCATTGA TATGCCATTG CATGGTTCTC GCTCTTACGA TGCTAACAGT GATGGCGTGT ATGAAGTATC TGCAACTGAT CCAAGTTTTG GTAGTGTTGT GGGGACTCCT GATGCGTTTG CAAATGGTAA TCCTTTAGTA TTTATTAACA TTGAAAGCAC ACTGAGTGTC CGTGATAATT TCCGTCAGGC GACTAACGAT CATTTAGCAC TACGCGCGTC ATTAACTGGT CTTGCTGGGG CACTTGCACA AGCTCAGTAT CCACAGATGT TTGATATTAA TAGTATCAGC GCACAAGGGC TAAGTTTAGG GGCCATTGTA GGGACTAACT TCTCCACTTA CGCGAGTACT GGTGTGACTC ACCCAGAGTC GGGACTTGAT TTAAGTTATG TTTATAAACT GAATGCGGCA TCACTAGTTG CCCCAAGCGG TGGATTTGCT GGGACCTTTA TCGGCTCTGC GACATTCGGT CCATTACTAT TTGCCAATGT GACGGCGAGC GATACTTTCC AAGCATTAGT CGATGAAGCG AATACTGCGG GTTATGAGCC AGGCTCTACT GAGTATGCGG CTCTGGTACA AACTGTTTAT GCTAACTTCT TGCCTAGCTT TGCTTTTGCT GTACAAACTG CTGTGGATAG TGCCGATCCG ATTAACCATG CCGCTGCACT TAAAGCGACT GAGCTTCCGA TACACTTGAT TGAAGTGGTT GGAGACGGTG ACATGCATCT ACCAGATCAG GTGTTGCCTA ATAGAGTTGA GAACTTCCCA GTCTCTGGTA CTGAGCCGTT AATCGCTAAT TTAGGCTTGG CCTGTGTAGA CACGACAACA ACGGGTGCTT CAGGAGCTGT TCGATTCTCT AAAGGTCACC ACAGCTCAAT TGTGAGCCCT GATGGTGTTG AAGGCTCTGC AGATGCAACA ACTGAGATGC AGACACAAGT TGCTAGCTAT GCCCTTACCG CAAGTAAAGG AAGTGCGAGT ATTATTGTTT CTGATGACGA GGTTCTTCAA GAGTGTCCTT AA
|
Protein sequence | MKRLFLGVAI ASALGLTGCS EDSVEEIKDK VEPLIPVSHL AFDPANGVVP LPNDLLFSGT SDGTLNLPGE AADGSSDYTD PTMALGALDG WSTTSPISIT VEPASDHDGS VLSLDVTSVS QPGAVRMFEA TVGGALSSDP ECQAATSVTA CKVGEELQYG VDFISTGSGN TIAIIPLKPL KPNQSYIYAT TNLIMDSEKR SIAPSTSYGL LKLDFETETL ETDDQKLLQE IVNSYEKGMA AAHGVDAESI TYSGLFTTQS VADVYETTKL LMLDPTPGNP FAPSISLPQP HPLGITVAQA AGLTPADGVA YAVSSLADVY TAELTIPTFG ACDSTKCSGI SGSWKALGDS PVSVLLALQA GTLSQTNFGM QAAAYNIDPA AALANPALLA GKTWLLDDGT AADKAKHLTK FNPIPQPTGQ EVVPVLISMP DAERVAQFSA SQGLDFTPPT AGWPTTIAMH GLGGGKEMSL AYAGSYAALG VATIAIDMPL HGSRSYDANS DGVYEVSATD PSFGSVVGTP DAFANGNPLV FINIESTLSV RDNFRQATND HLALRASLTG LAGALAQAQY PQMFDINSIS AQGLSLGAIV GTNFSTYAST GVTHPESGLD LSYVYKLNAA SLVAPSGGFA GTFIGSATFG PLLFANVTAS DTFQALVDEA NTAGYEPGST EYAALVQTVY ANFLPSFAFA VQTAVDSADP INHAAALKAT ELPIHLIEVV GDGDMHLPDQ VLPNRVENFP VSGTEPLIAN LGLACVDTTT TGASGAVRFS KGHHSSIVSP DGVEGSADAT TEMQTQVASY ALTASKGSAS IIVSDDEVLQ ECP
|
| |