Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2858 |
Symbol | |
ID | 6117173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3494533 |
End bp | 3495210 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634404 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001761228 |
Protein GI | 170727202 |
COG category | [S] Function unknown |
COG ID | [COG3226] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.211856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00171809 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCACC CATTGAGCTA CATTGGTCGC CAGACAAGCC GAAGTGACGG AGAAGCAAGA AGGGTGACTA TTCTTGAGGC AACGCTTAGG CTCATTGTCA AAGAGGGAAT ACGTGGTGTA AGGCATAGAG CAGTGGCCAA AGAGGCGGGA GTCCCTTTAG CGTCAACGAC CTATTACTTC AAGGATATTA AAGTCTTGAT CAGTGACTCT TTAACTTATT TTGCCGAGAA GACATTATGG ATGAACAAGG CCTTGGAAGC CCGCAGCTTT GAGTTGATAA ATTTTCTCGG TGAGGATGGA AAGAGTCGTG ATGATGAGCA TCTAGTGAAA TATTTAACCC AGTTTATCTG CGAGCATATT CGTGAACAGG TCAAGCACAG TGACGATAGG ATATTAGAGA TGGCTTTTCA CGAGGAAGCG CTGCGAAATC GTCAACTGGC AGGGGCTATC AAAACCTTAG ATGATTCATT TTTAGCAACA ATAACGCTTT TTTTTCAAAA ACTAGAGTCT GATACTTGTC TAGCCGATGC CTATCAGGTG CTGGGATTGA TTAAGCTGCT TGAGTATCAA TATGTGATGA GGGGCAATAT CGATGAAGAT AAAGCCCAGT TTGAATCTAT CGTTAACGCT AGCGTTCGAA AAATCATAGG TCACAGGGAG TTATCAATCA GTATATAG
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Protein sequence | MSHPLSYIGR QTSRSDGEAR RVTILEATLR LIVKEGIRGV RHRAVAKEAG VPLASTTYYF KDIKVLISDS LTYFAEKTLW MNKALEARSF ELINFLGEDG KSRDDEHLVK YLTQFICEHI REQVKHSDDR ILEMAFHEEA LRNRQLAGAI KTLDDSFLAT ITLFFQKLES DTCLADAYQV LGLIKLLEYQ YVMRGNIDED KAQFESIVNA SVRKIIGHRE LSISI
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