Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2835 |
Symbol | |
ID | 6117150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3464547 |
End bp | 3466394 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641634381 |
Product | CBS domain-containing protein |
Protein accession | YP_001761205 |
Protein GI | 170727179 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00609535 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGATGCAA GTGAGCTTCA ACCGATTACA GATTTTATAC AGGGACTTGT CCCCTTCGAT ACTCTGTCTA ATTCGACACT GGATCGATGT TGTAAAAGTT TAAGTGTTGG CTATTACAGC AAAGCATCTG CCTTTGTTCC TTTGGATGAA ACAGATCCTC AGCTATACAT TGTTCGCAGT GGTGCTTTTG AGGTGAGAAA TGATGATGGG GAGCTACTTG ATCGATTGGG AGAGGGGGAT TATTTTGGTT TCCCTTCACT CCTGTCTGGT GAAAAGGTCA GTAACCGGGT GCGCATTTTA GAAGATGGCT TGGTCTATCA TCTGGACCCC GATACCTTCG ATTATCTGCG TGTTGAGAGT CGGCAATTTG ATCGCTTCTT TAACCGTGCT TTCGCCAAAC GTCTCCGTCA TCAAGCTAGG TTTAAAGCGA AAGAGTTAAC CACGACTAGC AGAGTCAGCT CCTTGATGTC GAATAACCCT CTTATCATCG ATATAAACGC CTCAGTCAGT GATGCGGCGA AGAAGATGCG TGAGGCTAGA GTGTCCTCTG TACTGGTGAT TGATAACCAT AAACTGTGTG GAATTTTAAC CGACAGAGAT CTGCGAAATC GCGTGTTAGC AGAGGGACAA GATGGCAGTT TGCCTGTGCA TCAAGCCATG ACCACTCAGC CAAAAGTGCT CAGCTCTAAT GCTTTAGTCT TTGAGGCTAT GCTCTTGATG AGTGAACATG GTATTCATCA TCTGCCCATT GTCGATGATG AGAGAGCGGT TGGCGTTTTG ACCAGTACCG ATATTCTGCG TGGGCAAAGT TCGCAACCTT TGCTCTTGAT TGGCGAAATA GAGCGCCAAA ATAGCTTAGA TAGCCTTATC TCTGTGAGTA AACAGATCCC ACTGCTCCTA CAAAACTTAA TCAGTGCCGA TGCCAGAGCT GAGGAGATTG GTCGGGTACT GACCTCTGTC ACCGATGCCT TGACTCGTAG ATTGATCATA TTAAATCAAA AGCTGCTCGG TGAAGCACCG ATGGCTTTTT GCTGGCTGGC CTTTGGATCC CAGGGGCGAC AAGATCAGGC TGCTTGTTCA GATCAAGATA ACGGATTACT GCTTGCCCAT GAGCCTGATG AGGCCGCATC AGGCTATTTT GAGGCATTAA CAAAAGCTGT TTGTAGCGGC TTAGATAAGT GTGGTTATAT CTTTTGTCCC GGCGATATTA TGGCGCAAAA CCCCAAGTGG CGTTTAAGCC TCTCACAGTG GCAAAGCCGA TTCGCTAGTT GGGTTAATAC ACCTGAACCA AAAGCCTTAA TGCATGCCAG TATCTTCTTT GATATGCGCT CGGTGTTTGG TCCCACTTCC CTGTTCGATA GTCTGCAAGA CAAGGTGTTA GCAGAGACCA AAGATAATGA TATTTTTCTG GCTGGTATGA CAAATAACTC ACTGGTCGAG TCGCCACCTT TAGGTTTTTT TAAGAAGTTC GTGCTCGAGC GTGACGGCTC TGAAGTAAAG GGGATTGATC TTAAACATAA AGGTAATGCG CTAATTAATG ACATTGCACG TGTCTATGCC CTGTCGGCAG GGATTAAAGA GGTGAATACG GCAAAACGGA TCCGAGTGTT AATGGAGAAA GATATTATTA ACCGCAAAGA TGCACTTAAT CTTGCCGATG CCCATGAGTT TATCGCCCAT ATGCGCCTCT CTAATCAGGG CTATCAACAT ACTCACGCTA TGCCCATCTC TAACTACTTG CAACCTAAAC ACCTCTCCTC TTTAGTTAGG CATCAATTGA GGGATGCTTT CAAGGTGGTT CACGATGCTC AGTCTGGTAT AAAGCTGAAA TTTACTCGGA GCTTCTGA
|
Protein sequence | MDASELQPIT DFIQGLVPFD TLSNSTLDRC CKSLSVGYYS KASAFVPLDE TDPQLYIVRS GAFEVRNDDG ELLDRLGEGD YFGFPSLLSG EKVSNRVRIL EDGLVYHLDP DTFDYLRVES RQFDRFFNRA FAKRLRHQAR FKAKELTTTS RVSSLMSNNP LIIDINASVS DAAKKMREAR VSSVLVIDNH KLCGILTDRD LRNRVLAEGQ DGSLPVHQAM TTQPKVLSSN ALVFEAMLLM SEHGIHHLPI VDDERAVGVL TSTDILRGQS SQPLLLIGEI ERQNSLDSLI SVSKQIPLLL QNLISADARA EEIGRVLTSV TDALTRRLII LNQKLLGEAP MAFCWLAFGS QGRQDQAACS DQDNGLLLAH EPDEAASGYF EALTKAVCSG LDKCGYIFCP GDIMAQNPKW RLSLSQWQSR FASWVNTPEP KALMHASIFF DMRSVFGPTS LFDSLQDKVL AETKDNDIFL AGMTNNSLVE SPPLGFFKKF VLERDGSEVK GIDLKHKGNA LINDIARVYA LSAGIKEVNT AKRIRVLMEK DIINRKDALN LADAHEFIAH MRLSNQGYQH THAMPISNYL QPKHLSSLVR HQLRDAFKVV HDAQSGIKLK FTRSF
|
| |