Gene Swoo_2835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2835 
Symbol 
ID6117150 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3464547 
End bp3466394 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content46% 
IMG OID641634381 
ProductCBS domain-containing protein 
Protein accessionYP_001761205 
Protein GI170727179 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00609535 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATGCAA GTGAGCTTCA ACCGATTACA GATTTTATAC AGGGACTTGT CCCCTTCGAT 
ACTCTGTCTA ATTCGACACT GGATCGATGT TGTAAAAGTT TAAGTGTTGG CTATTACAGC
AAAGCATCTG CCTTTGTTCC TTTGGATGAA ACAGATCCTC AGCTATACAT TGTTCGCAGT
GGTGCTTTTG AGGTGAGAAA TGATGATGGG GAGCTACTTG ATCGATTGGG AGAGGGGGAT
TATTTTGGTT TCCCTTCACT CCTGTCTGGT GAAAAGGTCA GTAACCGGGT GCGCATTTTA
GAAGATGGCT TGGTCTATCA TCTGGACCCC GATACCTTCG ATTATCTGCG TGTTGAGAGT
CGGCAATTTG ATCGCTTCTT TAACCGTGCT TTCGCCAAAC GTCTCCGTCA TCAAGCTAGG
TTTAAAGCGA AAGAGTTAAC CACGACTAGC AGAGTCAGCT CCTTGATGTC GAATAACCCT
CTTATCATCG ATATAAACGC CTCAGTCAGT GATGCGGCGA AGAAGATGCG TGAGGCTAGA
GTGTCCTCTG TACTGGTGAT TGATAACCAT AAACTGTGTG GAATTTTAAC CGACAGAGAT
CTGCGAAATC GCGTGTTAGC AGAGGGACAA GATGGCAGTT TGCCTGTGCA TCAAGCCATG
ACCACTCAGC CAAAAGTGCT CAGCTCTAAT GCTTTAGTCT TTGAGGCTAT GCTCTTGATG
AGTGAACATG GTATTCATCA TCTGCCCATT GTCGATGATG AGAGAGCGGT TGGCGTTTTG
ACCAGTACCG ATATTCTGCG TGGGCAAAGT TCGCAACCTT TGCTCTTGAT TGGCGAAATA
GAGCGCCAAA ATAGCTTAGA TAGCCTTATC TCTGTGAGTA AACAGATCCC ACTGCTCCTA
CAAAACTTAA TCAGTGCCGA TGCCAGAGCT GAGGAGATTG GTCGGGTACT GACCTCTGTC
ACCGATGCCT TGACTCGTAG ATTGATCATA TTAAATCAAA AGCTGCTCGG TGAAGCACCG
ATGGCTTTTT GCTGGCTGGC CTTTGGATCC CAGGGGCGAC AAGATCAGGC TGCTTGTTCA
GATCAAGATA ACGGATTACT GCTTGCCCAT GAGCCTGATG AGGCCGCATC AGGCTATTTT
GAGGCATTAA CAAAAGCTGT TTGTAGCGGC TTAGATAAGT GTGGTTATAT CTTTTGTCCC
GGCGATATTA TGGCGCAAAA CCCCAAGTGG CGTTTAAGCC TCTCACAGTG GCAAAGCCGA
TTCGCTAGTT GGGTTAATAC ACCTGAACCA AAAGCCTTAA TGCATGCCAG TATCTTCTTT
GATATGCGCT CGGTGTTTGG TCCCACTTCC CTGTTCGATA GTCTGCAAGA CAAGGTGTTA
GCAGAGACCA AAGATAATGA TATTTTTCTG GCTGGTATGA CAAATAACTC ACTGGTCGAG
TCGCCACCTT TAGGTTTTTT TAAGAAGTTC GTGCTCGAGC GTGACGGCTC TGAAGTAAAG
GGGATTGATC TTAAACATAA AGGTAATGCG CTAATTAATG ACATTGCACG TGTCTATGCC
CTGTCGGCAG GGATTAAAGA GGTGAATACG GCAAAACGGA TCCGAGTGTT AATGGAGAAA
GATATTATTA ACCGCAAAGA TGCACTTAAT CTTGCCGATG CCCATGAGTT TATCGCCCAT
ATGCGCCTCT CTAATCAGGG CTATCAACAT ACTCACGCTA TGCCCATCTC TAACTACTTG
CAACCTAAAC ACCTCTCCTC TTTAGTTAGG CATCAATTGA GGGATGCTTT CAAGGTGGTT
CACGATGCTC AGTCTGGTAT AAAGCTGAAA TTTACTCGGA GCTTCTGA
 
Protein sequence
MDASELQPIT DFIQGLVPFD TLSNSTLDRC CKSLSVGYYS KASAFVPLDE TDPQLYIVRS 
GAFEVRNDDG ELLDRLGEGD YFGFPSLLSG EKVSNRVRIL EDGLVYHLDP DTFDYLRVES
RQFDRFFNRA FAKRLRHQAR FKAKELTTTS RVSSLMSNNP LIIDINASVS DAAKKMREAR
VSSVLVIDNH KLCGILTDRD LRNRVLAEGQ DGSLPVHQAM TTQPKVLSSN ALVFEAMLLM
SEHGIHHLPI VDDERAVGVL TSTDILRGQS SQPLLLIGEI ERQNSLDSLI SVSKQIPLLL
QNLISADARA EEIGRVLTSV TDALTRRLII LNQKLLGEAP MAFCWLAFGS QGRQDQAACS
DQDNGLLLAH EPDEAASGYF EALTKAVCSG LDKCGYIFCP GDIMAQNPKW RLSLSQWQSR
FASWVNTPEP KALMHASIFF DMRSVFGPTS LFDSLQDKVL AETKDNDIFL AGMTNNSLVE
SPPLGFFKKF VLERDGSEVK GIDLKHKGNA LINDIARVYA LSAGIKEVNT AKRIRVLMEK
DIINRKDALN LADAHEFIAH MRLSNQGYQH THAMPISNYL QPKHLSSLVR HQLRDAFKVV
HDAQSGIKLK FTRSF