| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2803 |
|---|
| Symbol | |
|---|
| ID | 6117112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3422921 |
|---|
| End bp | 3423775 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641634343 |
|---|
| Product | phosphonate ABC transporter, periplasmic phosphonate-binding protein |
|---|
| Protein accession | YP_001761173 |
|---|
| Protein GI | 170727147 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00271338 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.782993 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCTGT TCAAAATGGC TGCTTTGGTG GCATTAAGTT CGATATCTTC GAGTGTATTT
GCGGCCGTTT TCACTTTTAC CGCCATTCCA GATGAAAATG AAAGCCAACT TCGCACACGT
TTTGAGAAGG TCGCCGTCTA CCTTGAAAAA GAGCTAGGTG TTGAGGTGAA GTATGTACCG
GTAAAATCTT ACTCTGCAGC GGTGACAGCT TTTAGAAACA ATCAGGTACA ACTCGCATGG
TTTGGCGGGT TATCTGGTGT TCAAGCTCGT CGACTGGTGC CTGGTTCTGA AGCGATAGCC
CAGGGAAATG AAGATCAGTT TTTTCAAAGT TATTTTATTG CCAATAATTC AGCGCAGATC
ATCCCGTCTG ACAATTTTCC TAACTTAAAT GGGGTGACTT TTACCTTTGG TTCAAAGGGT
TCTACATCGG GTCGATTGAT GCCAGAGTTT TTTATTGAAA GAAACTTAGG TAAGAAAGCA
AAAGATGTGT TTAAGCGCAT AGGTTTCTCA GGCGATCACA GTCGTACCAT TACCCAAGTC
GAGTCGGGTG CTTATCAAGT GGGAGCCCTA AATTATAAGG TTTGGGAAAC CGCGGTAGAA
AACGGCACTG TTGATGTGAA TAAAGTGAAG GTTATCTGGC AAAGCCCTAC TTATCCTGAT
TACCAATGGA CGGTTAGGGA AGGGGTTGAT AGCGCATTTG GAGATGGATT TAAGCAGCGC
TTAACTCAGG CGTTACTGGA TATGGACGAT CCTGAGCTAT TGGCCAGTTT CCCACGAAAA
TCTTTTGTAC CCGCAGATAA CTTAGATTAT GAGCCTATTG AGAAGGTCGC TAAAGCGATA
GGGCTAATCG ATTAG
|
|---|
| Protein sequence | MGLFKMAALV ALSSISSSVF AAVFTFTAIP DENESQLRTR FEKVAVYLEK ELGVEVKYVP
VKSYSAAVTA FRNNQVQLAW FGGLSGVQAR RLVPGSEAIA QGNEDQFFQS YFIANNSAQI
IPSDNFPNLN GVTFTFGSKG STSGRLMPEF FIERNLGKKA KDVFKRIGFS GDHSRTITQV
ESGAYQVGAL NYKVWETAVE NGTVDVNKVK VIWQSPTYPD YQWTVREGVD SAFGDGFKQR
LTQALLDMDD PELLASFPRK SFVPADNLDY EPIEKVAKAI GLID
|
|---|
| |