| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2794 |
|---|
| Symbol | |
|---|
| ID | 6117103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3411976 |
|---|
| End bp | 3414129 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641634334 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001761164 |
|---|
| Protein GI | 170727138 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGCA AAATGTTCAG TAACATGAAG TTTAGGACAA AAATATTATC GGGATATGGT
TTGATACTGG GCTTGATGCT GCTTATTACA GTTGTTGTTT TTATCAGCGT TAAGTCACTT
TCAACTAATT TCGACTGGGT AAACCATACC CATGATGTAT TAGACCAAGC TTCAAAAATT
GAAGCGGCTG CTGTTGATAT GGAAACGGGG ATGAGGGGAT ATCTGCTTGC GGGGAAACCG
GACTTTTTAG AGCCCTATAA CAATGGTCGT GAGACCTTTA ATGCGTTACT GAAAGATCTT
CAAAAAACCG TGTCAGATAA CCCTGCTCAA GTCTCCTTGC TAAATGATAT CTCAGTGACG
ATAGGTGACT GGCAGACCCA AGTTACCGAG CCTGTCATCG CCTTGAGAAG TGAGATTGGC
GACTCAAAAA CAATGAATGA TATGGCTGAC GAGATAAAGC TTGCCAAAGG GAAGCAGTAT
TTCGACAGGT TTAGAGAGCA GCTCGCCACA TTTATTGAAC GTGAACGTGT GTTGATGGTT
GAGCGGCAAG CAAGAGCCAG CCGCACTCAG GATATTTATG AGTTGAGACA GTTAACTCAG
TGGGTTGAGC ACACTTATAA GGTTATTAGC GCTGCGCAGT CTATTGTTGC GGCAGCTGTT
GATATGGAGA CCGGCATGAG AGGCTTTTTA CTTGCTGGTA GGGAGGAGTT TCTCGCTCCT
TATATTAGTG GAAGGTCTCA GTTCTATAAA TTGGTCGATG AGTTGTCGCA GACTGTTTCT
GATAATCCAG CTCAAGTAAC CCTTTTACAG GAGAGCAAGC AGACCATAGA TAGTTGGATA
ACAGAAGTTG TAGAGAAACA GATAGCCTTG AGGCATGAAA TCGGTGATGC AAAGAACATG
GATGATATGG CGGATCTTGT TGGCCAAGCA AAGGGTAAGG TCTATTTCGA TAAATTTAGG
GAGCAGATAA AAACATTTAA GGATAGAGAG GGTAGCTTGA TGGGAGCTCG CAAGGACTCC
TTGGCCAGTA CTGAGTCTTT AGTCATTAAC TTAACCATCT TTGGCACCTT GTTCGCCATT
ATTATTGGCA TAGGTATCGC CTTATGGCTA ACCAGACATG TGATGGAGCT TCTTGGTGGA
GAGCCCACCT ATATTGCTGG TATTGCTAAA AAGGTTGCCG AGGGTGATCT GTCGATGAAT
CTGCAGAGTA GCGGAGTGGA TAAAGGTATT TTTGCTGAGA TGAAGAGCAT GATGGGATCT
CTCAATGAGA AAGTGAGTTT GGCTGAGCGA ATTGCCCAAG GGGAGCTCGA TCAGCATGTG
AAGTTGGCTT CAGAGCGTGA CGCCTTAGGT ATTGCCCTTA GATCAATGAC AGAAAATCTC
AATGACGTAT TAGGTCAAAC ACAAACAGCA AGTGATGAAA TATCCCAGGG CAGCTCTAGT
GTATCGAGTA GCAGTTCTGC ACTTTCAGAT GGCGCTTCTA GGCAGTCAGG AAGTTTGGAC
AATATCGCAA GTTCTCTTAA TGAGTTAAGT ACTCAGATAA ATACTAATGC ACAAAATGCG
AATCAGGCGA GTGTACTTGC AGGTCAAGCT CAGACTGCTG CACAAGAGGG AAGCAAGAAG
ATGGAGGGGA TGGTGGTTGC CATGTCTGAA ATGTCAGAGG CGAGTAAAAG TATCTCAGGA
TTTATTAGCA CCATTGATGA GATTGCAGCT CAAACCAATC TGTTAGCACT CAATGCTGCA
ATTGAGGCTG CACGAGCTGG TGAGCAAGGA CGTGGATTTG CCGTGGTAGC CGATGAGGTG
CGTAGTTTAG CGGCTAGAAG TACAACAGCA GCCGAAGAGA CATCGAAGCT GATTGCAGGC
TCTGTGGTTA AAACAGAGAA GGGCAGCGCC ATTGCCAATG AAACAGCCGA GAGTTTGAGG
AGCATTTTCG ATACGGTGAG TAAGACATCT GAGCTTGTTG CTGAGATAGC AACGGCAAGT
AATGAGCAAG CAATTGGTGC AGAAACGATA AATCAAGGAG TGGTAGAGAT AGATGGCGTA
ACTCAACAGA ACAATGAGAC AGCGCAGCAA AGTGCGGCTG CTGCGGTGCA ATTATCTCAA
CAAGCTGAAC AGCTACAAAG CATGTTGTCA CGTTTCAAAC TGCGTAATGC ATAA
|
|---|
| Protein sequence | MDSKMFSNMK FRTKILSGYG LILGLMLLIT VVVFISVKSL STNFDWVNHT HDVLDQASKI
EAAAVDMETG MRGYLLAGKP DFLEPYNNGR ETFNALLKDL QKTVSDNPAQ VSLLNDISVT
IGDWQTQVTE PVIALRSEIG DSKTMNDMAD EIKLAKGKQY FDRFREQLAT FIERERVLMV
ERQARASRTQ DIYELRQLTQ WVEHTYKVIS AAQSIVAAAV DMETGMRGFL LAGREEFLAP
YISGRSQFYK LVDELSQTVS DNPAQVTLLQ ESKQTIDSWI TEVVEKQIAL RHEIGDAKNM
DDMADLVGQA KGKVYFDKFR EQIKTFKDRE GSLMGARKDS LASTESLVIN LTIFGTLFAI
IIGIGIALWL TRHVMELLGG EPTYIAGIAK KVAEGDLSMN LQSSGVDKGI FAEMKSMMGS
LNEKVSLAER IAQGELDQHV KLASERDALG IALRSMTENL NDVLGQTQTA SDEISQGSSS
VSSSSSALSD GASRQSGSLD NIASSLNELS TQINTNAQNA NQASVLAGQA QTAAQEGSKK
MEGMVVAMSE MSEASKSISG FISTIDEIAA QTNLLALNAA IEAARAGEQG RGFAVVADEV
RSLAARSTTA AEETSKLIAG SVVKTEKGSA IANETAESLR SIFDTVSKTS ELVAEIATAS
NEQAIGAETI NQGVVEIDGV TQQNNETAQQ SAAAAVQLSQ QAEQLQSMLS RFKLRNA
|
|---|
| |