Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2793 |
Symbol | |
ID | 6117102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3410891 |
End bp | 3411943 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634333 |
Product | porin |
Protein accession | YP_001761163 |
Protein GI | 170727137 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.500641 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAATA GACAAATAAC GCTCCTAGCA GCTTGTATCA CTTGTTTGTG TTCACCGGCA CAGGCGATCG AACTTAATAT CTACGGTCAA GGTCATCTCT CGGTTGATAG TGTTGATGAT GGACAAGATA GCAGTATCTA TGTTGCAAGT AACTCATCCC GTTTAGGCTT TAATGGCGAC CATCAGATAA ACTCAGATCT GAAAATTATT TTTCAATATG AAACTGGTGT CGACCTTACA GCTCAAGGAG GAAATGATGG TAATGGTGGT GCTGAGTCTT CTGGGCAGAT ATTTACCAAA GGCCGTCCTT CGTTTTTAGG TATTGAAGGC AAATTTGGTA CTGCTTTAGC CGGCCACATG CCATTTTTAG ATCAATATGC CAATGATTAT AATCTGTTTG CCGATCAGGT TGGCGATCTG GGGAACCTCT GGGAAGCCAG TGGTATACCG GGACGTTCCG ATAATGTGGT CTATTATAAA ACTCCTGACT TTTCTGGTTT TGATGCTGCT GTGACTTATG TTCCAGAGGA GGGGGTTGAT GACTCTGATT ATTACCTCTT GAAGGGGAAC TATGTTAGAG ATGATTTAAA GTTAGGTGTC ATGTACACAA GTATCGGCCA AGGGGAGATG GTTGATAAAG ACCATACTGC AGCTGCAGTA ACCTTAGGTT ACCACTTTGG ACGCTTTAGC GTAGGTGGTG GTTATCAAAG TGAGATGGAT ATCGGTGGTT CACCTGGGAA TGATAGAGAT AGTTTCTCCC TTGGTGGCAG CATGGAGGTG GGGGACAAGG GTAAAATCAA AGCGCAATTT GCCGTTAGCT CTGGTGAAGG AGATGCAAGT GATGCAACTC AGATAGCCGT CGGTTACGAT TATCAATTTG ATACTCAAAC AACCCTCTAC ATTGCGTATG CGAATATGGA TAATGACGAT AATGTTAACT TTAGTGTGAA TGGTAAAGGC CATGGAGATA AGGTGGTGCC TTTAATGGGC AATGACCCTC ACGCTATCTC ACTTGGTATT GTTTACTCAT TTTCTCATGC GGTCGTTAAA TAA
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Protein sequence | MMNRQITLLA ACITCLCSPA QAIELNIYGQ GHLSVDSVDD GQDSSIYVAS NSSRLGFNGD HQINSDLKII FQYETGVDLT AQGGNDGNGG AESSGQIFTK GRPSFLGIEG KFGTALAGHM PFLDQYANDY NLFADQVGDL GNLWEASGIP GRSDNVVYYK TPDFSGFDAA VTYVPEEGVD DSDYYLLKGN YVRDDLKLGV MYTSIGQGEM VDKDHTAAAV TLGYHFGRFS VGGGYQSEMD IGGSPGNDRD SFSLGGSMEV GDKGKIKAQF AVSSGEGDAS DATQIAVGYD YQFDTQTTLY IAYANMDNDD NVNFSVNGKG HGDKVVPLMG NDPHAISLGI VYSFSHAVVK
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