Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2748 |
Symbol | |
ID | 6117056 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3365043 |
End bp | 3366998 |
Gene Length | 1956 bp |
Protein Length | 651 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641634288 |
Product | diguanylate cyclase |
Protein accession | YP_001761119 |
Protein GI | 170727093 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0199433 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0067097 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGTAATG GTAAGTTAGT TGTATATCTT CTGATAATAT GGGCTTGGCA AATGCCATTG ATAGCTCAAA GTACGGAGTT TACTCCTTTT GTTAATATTG CCACACTGAG TAATGGCAAA AAAATATTGC AACTCCTTGA TAGTCAAGAT ATCGATTCGA AAATTAAACT GCAAAAACTC AATCAATATA TCTTGGCAGA GCAATTTCAA CAATCTCCCT ATTACGCATT CGCATACTTT CGTATCTTAC ATGATATTGA GATATCCCGT GGACAACCTA AAAAGGCCAA GCAAGCGATA GAGAGTATGC TTTCGATTGG AAAAGAGCTG CAACAGACTT GGTTGGAAGC TGAAGCCTAT ATGTGGCTTG CAACATTTGC GGCTAAAGAG GGTAATTTCG ATAATGGACT TAATCTAGTA GAGCGAGCAA TCCGCTTATC GAAATCGGTT CAGTTTCATC ATTTAACGGC AAGGTCATAT AACACCAAAG CCGCCTTATA TTATTTCCAG GATCAATATT ACCTCGCACT TGAGCTCTAC TTGAGTGCAC TTGAGATCTT TATGATTGAT CCTGAAGATC CCTATGTCAG CAAGGTGTTA TCTAATATTT CAATTATTTA CTTAGATCTT GAGGAGTGGG ATAAGGCGTG GGAGTCAAAT TATGATGCAC TACAACATCT TGAAAAGTAT GGTGGCAGTA ATGAGCAGTA TACGGCCTTT AACAATAATG CGGCATTTAT CTTAGAGCAG CTAGGTAGGG TAGAGGAGAG TGAACCCTAT TTGATTAATG CACAAAAGTA CAGTGAGCGC ACCGGAGATA TACGGATAAA GCTCAACAAC CTTTTAGCTT GGGCTCACTA TTATATTTCG ATCAAGCAAT ATCCACGTGC AATTACCTTT GCCGAGCAAT GCCTCAACAA TGCTCAGGTT GAGAGTTATC CTGTTATTTA TAGTGATTGT AATCGGTTAC TGGCGAAGGC TTTGCACCAT TTAGGGCAGC ATAAAGAAGC CATAGAGGTG TTGAACTTGA GTCACAGCTT GTATAAGGAG ATGGAGAGTC AGGCCAATTT GGCCGATGTT TATGCTTTAT ATTCTCTTGC TTTTGAAGCG CAAGGTGATT TTCAAACAGC CTTAATTTAT CAACGTCAGG CGAATATAGA AGATAAAGCT TTGCTGTTTG ATAGACGAGC AAAGATGATT TTTAATTTAA GCGAGCAGTA TAAAGATAAA TATCGCCAAC AACAGTTAGC ACTGTTGGAG GCTGAAAATG CATTACAGAC CGCTAAGTTA GCAGAGCAGG GAACCCGTGA GAAGTTGATG TTTTTTCTAA TCCTTGTCGG GGTATTTTTA ATTTTTATTT TGGTTAAAAA GCGCTATTGG CTTGAAAGTC ATAACAAGAG TTTGCAGGAT TCAAATGATG AGCTTTACAA GCAATCCCAT ATCGATAGTT TGACTGGCTT ATATAACCGA AGGTACTTTC TTGATTATTT AAATCAACTT ACGCAACTGT CGCAGAGGCA GGCATCACAG GCTTGTATCG CCATTGTCGA TATCGACCAT TTCAAGGCTG TTAATGACAC TTATGGCCAT GATATGGGGG ATGAAGTGCT AATACAGATA AGTAAAGCAC TGCACGCAAA TATTCGCGAT AGCGATCTCG TTGTTCGTTG GGGAGGTGAG GAGTTTGTTA TCTTGCTTTG TTGGCCGCAA AATTACACGT CTATCGGCTC AGAAGAGCTA TTGGCTAAGT TTGAACGTAT ACGTTTAGCT GTATGCAATA AACCACTAGT GATGGATAAA CTGACTATTC CTATTACTGT TTCTATTGGT ATAAGCCAGC CTCTAGACGC CAAAGAGCTA ACACTTGAAT GGCACAGCGC CCTGGAGCAT GCTGATAAAG CACTGTATCA AGCCAAAGGC CTTGGACGTA ATTGCGTCAT TATGGCTAAA AATTAA
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Protein sequence | MRNGKLVVYL LIIWAWQMPL IAQSTEFTPF VNIATLSNGK KILQLLDSQD IDSKIKLQKL NQYILAEQFQ QSPYYAFAYF RILHDIEISR GQPKKAKQAI ESMLSIGKEL QQTWLEAEAY MWLATFAAKE GNFDNGLNLV ERAIRLSKSV QFHHLTARSY NTKAALYYFQ DQYYLALELY LSALEIFMID PEDPYVSKVL SNISIIYLDL EEWDKAWESN YDALQHLEKY GGSNEQYTAF NNNAAFILEQ LGRVEESEPY LINAQKYSER TGDIRIKLNN LLAWAHYYIS IKQYPRAITF AEQCLNNAQV ESYPVIYSDC NRLLAKALHH LGQHKEAIEV LNLSHSLYKE MESQANLADV YALYSLAFEA QGDFQTALIY QRQANIEDKA LLFDRRAKMI FNLSEQYKDK YRQQQLALLE AENALQTAKL AEQGTREKLM FFLILVGVFL IFILVKKRYW LESHNKSLQD SNDELYKQSH IDSLTGLYNR RYFLDYLNQL TQLSQRQASQ ACIAIVDIDH FKAVNDTYGH DMGDEVLIQI SKALHANIRD SDLVVRWGGE EFVILLCWPQ NYTSIGSEEL LAKFERIRLA VCNKPLVMDK LTIPITVSIG ISQPLDAKEL TLEWHSALEH ADKALYQAKG LGRNCVIMAK N
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