Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2642 |
Symbol | |
ID | 6116941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3234843 |
End bp | 3238532 |
Gene Length | 3690 bp |
Protein Length | 1229 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641634174 |
Product | exodeoxyribonuclease V, beta subunit |
Protein accession | YP_001761014 |
Protein GI | 170726988 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAGTA ATAATACAGT GAATCAGACA GGCTCTGTCC CGTTAAACAC CCTCACCTTG CCCTTTGGTG GCAGTCGTTT GATTGAGGCC AGTGCTGGTA CAGGCAAAAC CTTCACCATC GCAGGGCTTT ATGTGCGCCT TTTGCTCGGT CACGAGATCC CAACGCCACT GACCTGCGAG CAGATATTAG TGGTCACTTT TACCAATGCG GCAACGGGCG AGCTTAGGGA TCGTATTCGC CGCAAGATAC AGCTGGCCTA CCGCTGCTTT ATCGGTTTAG ATACCGGTGA TGAGTTGATT GAGTCTCTCT ATCGACTCAC TCCTGAATCT GAGCGCCCAC TGGCACTAAA GCGACTCGAC TTGGCGCTTA AATCTTTAGA TGAAGCCTCT ATCTTTACCA TTCACGGTTT CTGTCAGCGG ATCTTGGCCG ACATGGCTTT TGAGTCCTCC CTGCTGTTTG AGTCAGAATT TACCTTAGAT GACAGCGAGT TTTTGCACCA TGCGGTGCGT GATTTCTGGC GTGAGCAGTG CTATCCGCTG CCTATCTATC TTGCTGAGAT CATACAGAAG AAATTTAGCG ACCCTGACGC CCTATCTAAG CAGCTCAGGC CGCTACTTGG CGCGAGTCAG GCCACAGCCC AGCCGACACC TCAGCCCTTT GAGAAACTGC AGCAGACCTT AACTCAAAGC TTAAGTCGTC TGAAACTTAT CTGGCCACGT GAGCGTGAAA ATATCGAAGC TTTACTCCAT GCACTCCCAT TAAATGGTGT TCGATTTGGT AAGAAGCCCG ATGGTTACCC TAAACTTGCC GTTATGCTCG ATGCCATGGA CAACTGGTGC AAGTTCAGTG ACAGTCTGCC ACCTATGAAG GTGATGGAGT CTCTGTCACT GAGTGAGCTT AAGCTCAATA AGGGTGGTGA AATACCAACA CCTGAGCAAG CCCCTGTGCT GGATCATATC GAGCGTTTAT GCTCGCTTAT TAACGACTTT ATCCCAAGTT TTCTCTATTG TGCCAGAGAG GGGATCTCAC GCCGATTTAT CCAACAAAAA TCTGAGCGTA ACCTGTTAAC CCCAGATGAT CTACTGACTA CCTTAGAGCA AGCACTGCGC CCCAATGAGC ACGGCGAGTC CACCTTGGCT AACACAGCTC AATTGGCCGC AACCATTGCC AAACGTTTTC CAGTGGCACT GATTGATGAG TTTCAAGATA CCGATCCACT GCAATTCGCA ATCTTTAGCC GCATCTACCA GATGCAAGCT AACATTCCAG CAAAGGCAGG TGCAGGTAAC TTAAGCCTGT TGATGATTGG CGATCCGAAA CAGGCTATCT ATGCTTTTAG GGGCGCGGAT ATTCACACTT ATATTCAGGC CAGAACACAA ACTCAAGATC ACTATAATCT CGATACCAAC TATCGCTCTA GCCGCAATAT GATTGTGGGT GTTAACGCCC TGTTTGAGAA TCGAGACGAT CCCTTTATCA GCCAAGCGAT CCCGTTTGAG CCTGTGCACC CCTCACCTTT TGCCGATAAA AAGGTGTTTA TCGAAAGTGG AGGCGATGAT TCAGCGCTCA AAATTAAACT GCTTAGTGAA GATCCTGAAA AGGGGTTGAA TAAAACCACC GCCAGAAAAC GCTTAGCGGA AGATGCCGCC GCTGAGATCT GCAGGCTGCT CACACAATCA CAAGCTGGCG AATGCAGCAT TAGCGGTCAA CCACTAAAAG CCAAAGATAT TGCCGTACTG GTGCGTGACA GAAATGAAGC AGCTGTGATT AAGCAGTCTT TGTCAGACAG GCAGATTGGC GCCGTATTTT TAAGTCGTGA CAGCGTATTT AACACCTTAG AAGCCCGCGA AATGGCCTTG GTGCTTCACG CCCTTGCGAC GCCAAAAGAT GAGCGAGCAC TGAGATCGGC TTTAGCCACT TCACTGCTTG GCTTTGATGC GCTATCGATC CACAGTTTTA ACCAAGATGA GATGGTCAGA CAGACCCTGC TTGAACAGTT TGATGAGCTA CATAAGAACT GGTTAAGGCG TGGAGTCATG CCAGCACTGC TGAATCTGGC TAACGAAACT AAACTGATTG AGCGCCTACT TCAAGATGAA GATGGCGAAC GACGGTTAAC AGATTTCAGG CACTTGGCCG AGTTATTGCA ACAAAAAGCC ACAGAGCTTG ATGGTATTAG CGCGCTGGTG AACTGGTATG AGCAAGCGCT CATCGAAAAT AATGCCAATG AAGAAGCACA ACTAAGACTC GAAAGTGAGC AGAACCTAGT TCAAATCGTC ACCATACATA AGAGTAAGGG ACTCGAGTAT CCGGTCTGTT TTATCCCCTT TGTTAGCTTA GCCAGAGACA ACCGTCGCAA GCCTGCGCCA ATGCTTTACC ATGAAAATAA CAAGTTAGTG TGGGATATCG CGCAAAGTGA TGAGGGCTGG GAGCGGCATA AACGTGAAAA CTTAGCCGAA GATCTGCGCC TACTCTATGT CGCCATGACC CGACCTGTGT ATCAATGTTA TCTCTATGTG GCTAACCACA GTCGCTTTAC CAAAAAAGCG GGGATCACCA GCCAGCTCCA TGAAACTGGT ATTGGTTACC TACTGGGCAT TGAAGATAAA GCCTGCGAGT TTTCGCGTAT TCAATCTCAG GCGCAAAAGC TGATGGAGCA AGCCATTAGC GTCATACAGA TGGGCGATGA CGCCTCAACT CAACCTCTGG ATAATATTTC AGATATTGAG CTCAAATTAG CCCCTAAAGA GCTCAAACGA AAGCTATACA CACCTTGGCG TGTGGGCAGT TACTCTGGGC TGGTGAAAGA TCTGCCCCAT GAACATATTG CCCCTGGCGC CGATGATGAA GCTTTTCCAG AGCTTGAAAT CATTCAAGAT GAGGTCGACC CAACTCCCTC TAGATTCACG TTTGAACGTG GCGCCAATGC TGGTAGCTTT ATGCACTTAG TACTGGAATT GATTGATTTT CCCCAAGCTG AAACTGAATT GCCCATTCAC CTGCCGATCG CCATGGAAAA GTATGGCATA GATGAGAGCT GGTATGAGGT ACTAAACATT TGGTATCGAG ATCTTCTAGC ATCGCCATTG GTTGCAGATG GCTCGCTAAA ACTGGCTCAA TTAGCTCACG CGCAAAAGTT GGTGGAGATG GAGTTTTACC TGCCAATTAA TCAACTGATC GCAGTTAAGC TTAATACTTT ACTCGAAACC CATGGTTACA GCGCAGGTTT GAACTTTGAA TCCCTAAAGG GGATGCTCAA AGGTTTTATC GATCTCACTT TCGAGCACCA AGGTCAGTTC TACATTGCCG ATTACAAATC TAACCATTTG GGTGATGATG TTAGCCATTA TGGCTTTGAT GCCATGAAAG GGGCTATCCG TAGCCATAGA TACGATCTGC AGTACATCAT CTATACCTTA GCGCTGCATC GGTATCTGCG ATTGAGAATG CCAAATTATA ATTACGATCA ACATATCGGC GGCAGTTTTT ACCTTTTCCT GCGGGGTATG TCTACCGCAG CACCACTATC AGGTGTTTTC TATGACAAAC CGCCTAGAGC ACTTATCGAA TCCCTCGATA CACTGTTCGA TATAGATCTA AATGAGCCTA AGGAGCAGAT CATAGCAACA GCTCAATCAA CCCAGACAGC ACAGCCTTCA CAGACAGATC AGATGGAGCT TAAGCTATGA
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Protein sequence | MTSNNTVNQT GSVPLNTLTL PFGGSRLIEA SAGTGKTFTI AGLYVRLLLG HEIPTPLTCE QILVVTFTNA ATGELRDRIR RKIQLAYRCF IGLDTGDELI ESLYRLTPES ERPLALKRLD LALKSLDEAS IFTIHGFCQR ILADMAFESS LLFESEFTLD DSEFLHHAVR DFWREQCYPL PIYLAEIIQK KFSDPDALSK QLRPLLGASQ ATAQPTPQPF EKLQQTLTQS LSRLKLIWPR ERENIEALLH ALPLNGVRFG KKPDGYPKLA VMLDAMDNWC KFSDSLPPMK VMESLSLSEL KLNKGGEIPT PEQAPVLDHI ERLCSLINDF IPSFLYCARE GISRRFIQQK SERNLLTPDD LLTTLEQALR PNEHGESTLA NTAQLAATIA KRFPVALIDE FQDTDPLQFA IFSRIYQMQA NIPAKAGAGN LSLLMIGDPK QAIYAFRGAD IHTYIQARTQ TQDHYNLDTN YRSSRNMIVG VNALFENRDD PFISQAIPFE PVHPSPFADK KVFIESGGDD SALKIKLLSE DPEKGLNKTT ARKRLAEDAA AEICRLLTQS QAGECSISGQ PLKAKDIAVL VRDRNEAAVI KQSLSDRQIG AVFLSRDSVF NTLEAREMAL VLHALATPKD ERALRSALAT SLLGFDALSI HSFNQDEMVR QTLLEQFDEL HKNWLRRGVM PALLNLANET KLIERLLQDE DGERRLTDFR HLAELLQQKA TELDGISALV NWYEQALIEN NANEEAQLRL ESEQNLVQIV TIHKSKGLEY PVCFIPFVSL ARDNRRKPAP MLYHENNKLV WDIAQSDEGW ERHKRENLAE DLRLLYVAMT RPVYQCYLYV ANHSRFTKKA GITSQLHETG IGYLLGIEDK ACEFSRIQSQ AQKLMEQAIS VIQMGDDAST QPLDNISDIE LKLAPKELKR KLYTPWRVGS YSGLVKDLPH EHIAPGADDE AFPELEIIQD EVDPTPSRFT FERGANAGSF MHLVLELIDF PQAETELPIH LPIAMEKYGI DESWYEVLNI WYRDLLASPL VADGSLKLAQ LAHAQKLVEM EFYLPINQLI AVKLNTLLET HGYSAGLNFE SLKGMLKGFI DLTFEHQGQF YIADYKSNHL GDDVSHYGFD AMKGAIRSHR YDLQYIIYTL ALHRYLRLRM PNYNYDQHIG GSFYLFLRGM STAAPLSGVF YDKPPRALIE SLDTLFDIDL NEPKEQIIAT AQSTQTAQPS QTDQMELKL
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