Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2598 |
Symbol | |
ID | 6116895 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3175862 |
End bp | 3177589 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641634128 |
Product | major facilitator transporter |
Protein accession | YP_001760970 |
Protein GI | 170726944 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.823661 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.545914 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTAAAG TTGCACGAAC TCCGTTACCA AAGACCTTTT TTGTAGCAAA TACCATGGAG ATTTTTGAGC GTTTGGCTTG GTATGGCTTC TTTACCCTGT CATCACTCTA TATGACCTCG CCAATACTTC AGGGAGGACT AGGGTTTAGT GAGCAGGAAC GAGGCCTATT ACAAGGGATG ATCCCCTTCT TCCTCTACCT GGTCCCGGTA CTTACTGGCG CACTGGCCGA TAGATATGGA TACCGGAAAA TGTTCCTACT TGCATACGCC ATCATGAGTC CCTGCTACTT CTTACTTGGT CAGGTTGACT CTTTTGCAGG TTTCTTTATT GCCTTTATGG GAGTTGCATT AGGTGCAGCC TGTTTTAAAC CCGTGGTAAC AGGCACTGTG GCTAGAACAA CAGATGAAAC CAATCGAGGC CTAGGTTTCG GCATTTTTTA TATGATGGTC AATATCGGTG GCTTTCTTGG TCCGTTTATC GCCGGATATG TGCGTGCGAT CAGTTGGGAT TGGGTCTTTA TTATGTCCTC ATTCTGGATC GCCGTGAACT TCATCCCTGC CCTACTTTTT TATCAAGAGC CAACAGATCA AGCTAAGCAA AAGGGAAAAC CACTAAAAGC TGTGTTATCT GATATTCAAG AGGTACTCGG AAATCTACGA TTTGCTATCC TCTTTTTTGG TTCATTAGTG ATCTTAATGG CTTATGGAGC TAAGTGGCTA ACAGGCAATG AAACACTGCT CATCTACCTT GGCTGGTTTG TGGGCCACTA TCTCTGGGAT CTAAGTGCCA ACACGCAGAA AAATAGACCT TGGTACAGAC AGAAAATCAC TGTAGGAAAC AAACCCTTCG TCATCTATCT TTTGATCTTA TCCGGCTTCT GGATGGTCTA TCAGCAAATA TTTATCACCT TACCTATCTA TATTCGCGAC TTTGTCGATA CATCAGATCT CGTCGCGATA TTGGCGCAAT ATCCACAGCT GCTGAAGTTT TTTGCCCACG TCGAGTTAAA TGCGCTGCAA ACAGAGTTAT TAAGGCTATC CCAGGCTGTT TCTAATGGAG AGATTAATGT AAAACACGCC TACTTCGAAC TGGTTCACCT AAAGGTAATG GTACCTATAA ATGAATTAGC TCAAGGTCTC ACCAGCATTT CTATCGATCC CGCTAAAGCC AGCGAATTGG CCCAAAGCTG GGGCAATCAG CATAGACAGG TCAACCCAGA ATACTTAATT GGGCTTAACT TCCTCTCTAT CGTTCTGCTG CAGATCATTG TTAGCCGTTT CATCGAACGT TTTCAAGCAT TGCCAGTACT TGTGGGGGGA ACTGTGATCT TGGCTCTTGG AACGGCCCTA GGCGGGATTG CTCACGGCAT GATCATGGGC GGCATCATGG TTTTGACCTC CATCCTCGTA TTCTCCATTG GTGAGATGGT CGCATCACCG AAAAGTCAGG AATATGTCGC CAGTTTTGCC CCACAAGATA AGAAAGCCAT GTTTATGGGT TACTACTTCG TATCATCGGC TATCGGCTTT CTACTTGCCG GCCCGCTCTC GGGTTATCTC TACTCTGAAG TTGCAAAGCA GGCAGGTCGA CCAGATCTAA TGTGGTTTAT CATTGGAGGA TTTGGGCTTC TCACCGCCAT TGGACTAGTA CTTTTCAATA AGTTCAGTGC CAGCAAGCTC GTAGAGCAGC AGATAACTCA ATCACCTGTT GAGGAAGCAA GGGTATAG
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Protein sequence | MTKVARTPLP KTFFVANTME IFERLAWYGF FTLSSLYMTS PILQGGLGFS EQERGLLQGM IPFFLYLVPV LTGALADRYG YRKMFLLAYA IMSPCYFLLG QVDSFAGFFI AFMGVALGAA CFKPVVTGTV ARTTDETNRG LGFGIFYMMV NIGGFLGPFI AGYVRAISWD WVFIMSSFWI AVNFIPALLF YQEPTDQAKQ KGKPLKAVLS DIQEVLGNLR FAILFFGSLV ILMAYGAKWL TGNETLLIYL GWFVGHYLWD LSANTQKNRP WYRQKITVGN KPFVIYLLIL SGFWMVYQQI FITLPIYIRD FVDTSDLVAI LAQYPQLLKF FAHVELNALQ TELLRLSQAV SNGEINVKHA YFELVHLKVM VPINELAQGL TSISIDPAKA SELAQSWGNQ HRQVNPEYLI GLNFLSIVLL QIIVSRFIER FQALPVLVGG TVILALGTAL GGIAHGMIMG GIMVLTSILV FSIGEMVASP KSQEYVASFA PQDKKAMFMG YYFVSSAIGF LLAGPLSGYL YSEVAKQAGR PDLMWFIIGG FGLLTAIGLV LFNKFSASKL VEQQITQSPV EEARV
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