Gene Swoo_2576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2576 
Symbol 
ID6116873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3150578 
End bp3153373 
Gene Length2796 bp 
Protein Length931 aa 
Translation table11 
GC content43% 
IMG OID641634106 
Productdiguanylate cyclase 
Protein accessionYP_001760948 
Protein GI170726922 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000375627 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0011212 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAAATTAT TTATTAGATG TTTGAGCGTT TTCTTTTTTC TTTTATTCAC ATCTGTACTC 
GCCGCTAATG ATAAAAAGCC ACTAGTCATT GTGATGGGCG CCGACAGTTA CCCTTACCAG
TTTATTGGAG AGACGGGAGA GTCCGAAGGC TTACTGGTTG ATCTATGGAG AGCGTGGTCA
CAGCAAGTCG GTGAGGAAGT CGTCTTCGTT GCCCGGCATT GGAAAGAGGG GCTTGAACAG
CTCGACTCAG GTCAAGCCAG TGTACATATT GGCATGGCAG TAACAGATAA GCGTCTGCAA
CGCTTCGATT TTGCAACGCC AATTTCAACA GTTAATACTC ATCTGTATCT GCATAAGACG
CTAAATAAAA AGCACAACAT AGAAGAGCTT CAGCCTTATC ATGTGGGCAT AGTCTCAGGC
TCTTCCCATG AGGCTTCGTT ATTGGCACTT TCACCGAAGC TGACATTTAA GTATTACAAA
AACCGCAATG CGTTGTTACA GGCTGCGCTT ATTGGTGAAG TGTTGGTATT TGCTGGGATG
GAAGGGCAGA TAAAAAGCAG TAAGACCAGT CGTCAGATTG CAGAGCTATT TCCTAATAGG
AGTCGTTTAC TGATAAAACA GGTGGGGTTA AGTCCCGCGG TTAAACATGG AGAGACTCAA
CTATTAGCTA AGATCAATTC AGGTTTTTCT CTGCTAGATA ACGCGCGTAT TAGAGAGATT
GAGGCGCACT GGCTAGGCAT TGCTCAGGAG CAAGAGGGAG TAAGAATTGC AGCAACGTTA
AATATCGAAC CTTATGTCAA TTTAGGTGTT GATGGCAGAC CACATGGTTT ATATGTTGAT
ATCTGGGATT TATGGTCTGA GAAAACTGGG ATCCCAGTCA GCTACGCCAC TGGTGATATG
AATAGTTCAC TGGATTTTGT CCGCAAAGGT AAAGCAGATG TTCATATTGG TTATCCCGAA
AGTGATGCCC TTAATACTGG TTTACAAAGG TTGCAGCTTC TGTATCAAGT GAAAAGCCGT
TTATTTAGTG TCGGTGCGCC TATTGATACC TTGTCAGCGA TAAACCACAC CCGTATAGGT
GCGGTACCTA CAGCGCCTTA CTTAGATAAA TTAAAGCAGA CATTTCCAGA AGCCGAATTG
AAACTGTATG ACTCTGTCGA TGCCATGATA GAAGCTGCTC AAGCAGGGAA CATTTCAAGC
TTTGTTGCTT CTTCTGCATG GACTCAGCAC TACTTAGTTC AAAAGGGGGT TGGGCCTGAT
TTCTATCAGT TTATGGACTT AGAGTTTAAT ACCGATATCT TTGTTCTCTC CCAAGTAGGA
AACAGTGGAC TATCAAAGCG GATTAAGCAG GGGTTTGCAT TAATCAGCCA AGAAGAGTTT
GCAGAAATAG AGCAAAAATG GGTATTAGAC AGTAACAATC GGATCTATAC CGATAAGGTA
CATCTACTTG AAATATCTGA GCAGGATAAG GCGTATCTTG CGAATATGCC CCCTTTGAAG
GTCGGTTATC TGGCTAACTG GAAACCGATG GAATTTACTA ATCAAGCTGG CATTTTTTCT
GGTGTAAACA GCGAACTTGT AGAGCTCTTA CAAGATAAAT TAGCAATCGA AGTTGAAGCC
GTTGAGTATC CAAATTGGCA GAGCTTGATC TCTGCACTAC TCAAAGGTGA GGTCGAACTT
GCAGGGAGTG TAGCTAAAAC TCAAGACCGC TCAAGGCAGC TACTATTCAG TGAACCTTAT
TGGCCATCGC CGTGGGCCTT AGCGACGGGA ATTGATAAAG AATCTGTCTT TAATATTCAA
CAGTTATCGG GTCAAAGGGT GGCAATTGTT GAGGGTTACC AGCTGATCAA CGAGCTGTTA
GGGTCCGAAT ATGGCATAGA GTTAGTGTTA GTTGCAGATA CTGAAGCGGG ATTGAAAGCT
GTCTCTGATG GTCTCGCTGA TGCCTTTATT GAAAAAGTCA TTAATATGGC CGCTCAATTG
AAGCTTCAGC AGGTTAACCA GCTGAAAATG TCGGTTTTGG CCGATTTCTC TGAACAGCAT
AGTCATTTTG GAGTTCACCC AGATAGAGCA AGACTAGTGC CCTTGATTAA TCAGGTATTG
AGCGGTGTTA ATCAACCAAT GCGTCAAGAC ATCTACCGAA ATTGGGTGTC AAAAACCGCT
GCTGAGCCTT CAAGAGTAGG TTATTGGGCG TGTATGATTA TCTGTGTTTT CCTGATAATT
TTTGTCACTC TCTTTATCTT CGTGAAATTT TTACTCTCTA AAGAGGTAAA AAAGCGAAAA
GAGCTAGAAG AGAAGCTTTT GCACCTGACA AATTATGATA CCTTAACTCT TCTGCCGAAT
CGTTCACTGT TGGATGATAG GCTAGAACAG GCGATTTTAC TCCATGCTCG CGAGCTTGGT
ATGTTTGCTG TGCTATTTAT AGATTTTAGC GGAGTAAAAT CTGTTAATAC CGAATTAGGC
CATCAGGTGG GCGATCAGCT GATGAAAAAG TTGGCTCAAG GGTTAAGGCA ATCGGTGCGT
CGCTCAGATA CCGTGGCACG CTTTTCCAGT GATGAGTTTG TGGTGATTTT AAATCGCACT
AAAGACTTAG ATATTGTGTG TCAGGTTGCT GAAACCATCA TCAGTAACCT TTCAAAATCT
TTCGAAATTG AACAGATTGA TGTGAATGTG ATCACCAATA TTGGTATTGC CATGTACCCA
GCTGATGGTG ATGTGGCTGT CGAGTTATTG AAAACCGCGG ATGAATTAAT GTCTAGGGCG
AAAAAAAGTG GTGGAAATTG TTATAAATCA TCATGA
 
Protein sequence
MKLFIRCLSV FFFLLFTSVL AANDKKPLVI VMGADSYPYQ FIGETGESEG LLVDLWRAWS 
QQVGEEVVFV ARHWKEGLEQ LDSGQASVHI GMAVTDKRLQ RFDFATPIST VNTHLYLHKT
LNKKHNIEEL QPYHVGIVSG SSHEASLLAL SPKLTFKYYK NRNALLQAAL IGEVLVFAGM
EGQIKSSKTS RQIAELFPNR SRLLIKQVGL SPAVKHGETQ LLAKINSGFS LLDNARIREI
EAHWLGIAQE QEGVRIAATL NIEPYVNLGV DGRPHGLYVD IWDLWSEKTG IPVSYATGDM
NSSLDFVRKG KADVHIGYPE SDALNTGLQR LQLLYQVKSR LFSVGAPIDT LSAINHTRIG
AVPTAPYLDK LKQTFPEAEL KLYDSVDAMI EAAQAGNISS FVASSAWTQH YLVQKGVGPD
FYQFMDLEFN TDIFVLSQVG NSGLSKRIKQ GFALISQEEF AEIEQKWVLD SNNRIYTDKV
HLLEISEQDK AYLANMPPLK VGYLANWKPM EFTNQAGIFS GVNSELVELL QDKLAIEVEA
VEYPNWQSLI SALLKGEVEL AGSVAKTQDR SRQLLFSEPY WPSPWALATG IDKESVFNIQ
QLSGQRVAIV EGYQLINELL GSEYGIELVL VADTEAGLKA VSDGLADAFI EKVINMAAQL
KLQQVNQLKM SVLADFSEQH SHFGVHPDRA RLVPLINQVL SGVNQPMRQD IYRNWVSKTA
AEPSRVGYWA CMIICVFLII FVTLFIFVKF LLSKEVKKRK ELEEKLLHLT NYDTLTLLPN
RSLLDDRLEQ AILLHARELG MFAVLFIDFS GVKSVNTELG HQVGDQLMKK LAQGLRQSVR
RSDTVARFSS DEFVVILNRT KDLDIVCQVA ETIISNLSKS FEIEQIDVNV ITNIGIAMYP
ADGDVAVELL KTADELMSRA KKSGGNCYKS S