Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2576 |
Symbol | |
ID | 6116873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3150578 |
End bp | 3153373 |
Gene Length | 2796 bp |
Protein Length | 931 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634106 |
Product | diguanylate cyclase |
Protein accession | YP_001760948 |
Protein GI | 170726922 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000375627 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0011212 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAAATTAT TTATTAGATG TTTGAGCGTT TTCTTTTTTC TTTTATTCAC ATCTGTACTC GCCGCTAATG ATAAAAAGCC ACTAGTCATT GTGATGGGCG CCGACAGTTA CCCTTACCAG TTTATTGGAG AGACGGGAGA GTCCGAAGGC TTACTGGTTG ATCTATGGAG AGCGTGGTCA CAGCAAGTCG GTGAGGAAGT CGTCTTCGTT GCCCGGCATT GGAAAGAGGG GCTTGAACAG CTCGACTCAG GTCAAGCCAG TGTACATATT GGCATGGCAG TAACAGATAA GCGTCTGCAA CGCTTCGATT TTGCAACGCC AATTTCAACA GTTAATACTC ATCTGTATCT GCATAAGACG CTAAATAAAA AGCACAACAT AGAAGAGCTT CAGCCTTATC ATGTGGGCAT AGTCTCAGGC TCTTCCCATG AGGCTTCGTT ATTGGCACTT TCACCGAAGC TGACATTTAA GTATTACAAA AACCGCAATG CGTTGTTACA GGCTGCGCTT ATTGGTGAAG TGTTGGTATT TGCTGGGATG GAAGGGCAGA TAAAAAGCAG TAAGACCAGT CGTCAGATTG CAGAGCTATT TCCTAATAGG AGTCGTTTAC TGATAAAACA GGTGGGGTTA AGTCCCGCGG TTAAACATGG AGAGACTCAA CTATTAGCTA AGATCAATTC AGGTTTTTCT CTGCTAGATA ACGCGCGTAT TAGAGAGATT GAGGCGCACT GGCTAGGCAT TGCTCAGGAG CAAGAGGGAG TAAGAATTGC AGCAACGTTA AATATCGAAC CTTATGTCAA TTTAGGTGTT GATGGCAGAC CACATGGTTT ATATGTTGAT ATCTGGGATT TATGGTCTGA GAAAACTGGG ATCCCAGTCA GCTACGCCAC TGGTGATATG AATAGTTCAC TGGATTTTGT CCGCAAAGGT AAAGCAGATG TTCATATTGG TTATCCCGAA AGTGATGCCC TTAATACTGG TTTACAAAGG TTGCAGCTTC TGTATCAAGT GAAAAGCCGT TTATTTAGTG TCGGTGCGCC TATTGATACC TTGTCAGCGA TAAACCACAC CCGTATAGGT GCGGTACCTA CAGCGCCTTA CTTAGATAAA TTAAAGCAGA CATTTCCAGA AGCCGAATTG AAACTGTATG ACTCTGTCGA TGCCATGATA GAAGCTGCTC AAGCAGGGAA CATTTCAAGC TTTGTTGCTT CTTCTGCATG GACTCAGCAC TACTTAGTTC AAAAGGGGGT TGGGCCTGAT TTCTATCAGT TTATGGACTT AGAGTTTAAT ACCGATATCT TTGTTCTCTC CCAAGTAGGA AACAGTGGAC TATCAAAGCG GATTAAGCAG GGGTTTGCAT TAATCAGCCA AGAAGAGTTT GCAGAAATAG AGCAAAAATG GGTATTAGAC AGTAACAATC GGATCTATAC CGATAAGGTA CATCTACTTG AAATATCTGA GCAGGATAAG GCGTATCTTG CGAATATGCC CCCTTTGAAG GTCGGTTATC TGGCTAACTG GAAACCGATG GAATTTACTA ATCAAGCTGG CATTTTTTCT GGTGTAAACA GCGAACTTGT AGAGCTCTTA CAAGATAAAT TAGCAATCGA AGTTGAAGCC GTTGAGTATC CAAATTGGCA GAGCTTGATC TCTGCACTAC TCAAAGGTGA GGTCGAACTT GCAGGGAGTG TAGCTAAAAC TCAAGACCGC TCAAGGCAGC TACTATTCAG TGAACCTTAT TGGCCATCGC CGTGGGCCTT AGCGACGGGA ATTGATAAAG AATCTGTCTT TAATATTCAA CAGTTATCGG GTCAAAGGGT GGCAATTGTT GAGGGTTACC AGCTGATCAA CGAGCTGTTA GGGTCCGAAT ATGGCATAGA GTTAGTGTTA GTTGCAGATA CTGAAGCGGG ATTGAAAGCT GTCTCTGATG GTCTCGCTGA TGCCTTTATT GAAAAAGTCA TTAATATGGC CGCTCAATTG AAGCTTCAGC AGGTTAACCA GCTGAAAATG TCGGTTTTGG CCGATTTCTC TGAACAGCAT AGTCATTTTG GAGTTCACCC AGATAGAGCA AGACTAGTGC CCTTGATTAA TCAGGTATTG AGCGGTGTTA ATCAACCAAT GCGTCAAGAC ATCTACCGAA ATTGGGTGTC AAAAACCGCT GCTGAGCCTT CAAGAGTAGG TTATTGGGCG TGTATGATTA TCTGTGTTTT CCTGATAATT TTTGTCACTC TCTTTATCTT CGTGAAATTT TTACTCTCTA AAGAGGTAAA AAAGCGAAAA GAGCTAGAAG AGAAGCTTTT GCACCTGACA AATTATGATA CCTTAACTCT TCTGCCGAAT CGTTCACTGT TGGATGATAG GCTAGAACAG GCGATTTTAC TCCATGCTCG CGAGCTTGGT ATGTTTGCTG TGCTATTTAT AGATTTTAGC GGAGTAAAAT CTGTTAATAC CGAATTAGGC CATCAGGTGG GCGATCAGCT GATGAAAAAG TTGGCTCAAG GGTTAAGGCA ATCGGTGCGT CGCTCAGATA CCGTGGCACG CTTTTCCAGT GATGAGTTTG TGGTGATTTT AAATCGCACT AAAGACTTAG ATATTGTGTG TCAGGTTGCT GAAACCATCA TCAGTAACCT TTCAAAATCT TTCGAAATTG AACAGATTGA TGTGAATGTG ATCACCAATA TTGGTATTGC CATGTACCCA GCTGATGGTG ATGTGGCTGT CGAGTTATTG AAAACCGCGG ATGAATTAAT GTCTAGGGCG AAAAAAAGTG GTGGAAATTG TTATAAATCA TCATGA
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Protein sequence | MKLFIRCLSV FFFLLFTSVL AANDKKPLVI VMGADSYPYQ FIGETGESEG LLVDLWRAWS QQVGEEVVFV ARHWKEGLEQ LDSGQASVHI GMAVTDKRLQ RFDFATPIST VNTHLYLHKT LNKKHNIEEL QPYHVGIVSG SSHEASLLAL SPKLTFKYYK NRNALLQAAL IGEVLVFAGM EGQIKSSKTS RQIAELFPNR SRLLIKQVGL SPAVKHGETQ LLAKINSGFS LLDNARIREI EAHWLGIAQE QEGVRIAATL NIEPYVNLGV DGRPHGLYVD IWDLWSEKTG IPVSYATGDM NSSLDFVRKG KADVHIGYPE SDALNTGLQR LQLLYQVKSR LFSVGAPIDT LSAINHTRIG AVPTAPYLDK LKQTFPEAEL KLYDSVDAMI EAAQAGNISS FVASSAWTQH YLVQKGVGPD FYQFMDLEFN TDIFVLSQVG NSGLSKRIKQ GFALISQEEF AEIEQKWVLD SNNRIYTDKV HLLEISEQDK AYLANMPPLK VGYLANWKPM EFTNQAGIFS GVNSELVELL QDKLAIEVEA VEYPNWQSLI SALLKGEVEL AGSVAKTQDR SRQLLFSEPY WPSPWALATG IDKESVFNIQ QLSGQRVAIV EGYQLINELL GSEYGIELVL VADTEAGLKA VSDGLADAFI EKVINMAAQL KLQQVNQLKM SVLADFSEQH SHFGVHPDRA RLVPLINQVL SGVNQPMRQD IYRNWVSKTA AEPSRVGYWA CMIICVFLII FVTLFIFVKF LLSKEVKKRK ELEEKLLHLT NYDTLTLLPN RSLLDDRLEQ AILLHARELG MFAVLFIDFS GVKSVNTELG HQVGDQLMKK LAQGLRQSVR RSDTVARFSS DEFVVILNRT KDLDIVCQVA ETIISNLSKS FEIEQIDVNV ITNIGIAMYP ADGDVAVELL KTADELMSRA KKSGGNCYKS S
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