Gene Swoo_2562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2562 
Symbol 
ID6116859 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand+ 
Start bp3134259 
End bp3134897 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content43% 
IMG OID641634092 
Productendonuclease III 
Protein accessionYP_001760934 
Protein GI170726908 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.560783 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.0252184 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAAG AGAAACGACA AGCGATCTTA TCGATCCTCA GAGAAAATAA CCCTCACCCT 
GAAACTGAGC TAAATTTTTC GAGCCCCTTT GAGCTACTTG TCGCTGTGAC TCTGTCAGCT 
CAGGCTACCG ATGTTAGCGT TAACAAAGCA ACAGATAAGC TCTTTCCCAT CGCAAATACT 
GCCCAATCTA TCTACGCGTT AGGGGTTGAT GGACTCAAAG AGTATATAAA GACCATTGGC 
TTATACAATA ATAAAGCAAT TAATGTCATC AAGGCATGTG AGATATTAAT CGAGAAGTAT 
AATGGTGAAG TACCTGAAGA TCGTGAGGCA TTAGAGTCCC TTCCTGGTGT TGGTCGTAAA 
ACCGCAAATG TTGTACTAAA CACAGCTTTT GGCTGGCCAA CTATCGCTAT TGATACCCAT 
ATTTTTCGTG TCGCCAACCG CACAAAATTT GCCATGGGGA AAAATGTCGA TCAGGTTGAA 
GAGAAGATGT TAAAAGTCGT TCCTGCGGAG TTTAAGGTTG ATGTACACCA CTGGTTTATT 
CTCCATGGCC GCTATACCTG CGTTGCCCGC AAACCTCGTT GTGGCAGCTG TCTAATCGAA 
GAGCTGTGCG AGTTTAAAGA GAAGGTCTAT CCTGAGTGA
 
Protein sequence
MNKEKRQAIL SILRENNPHP ETELNFSSPF ELLVAVTLSA QATDVSVNKA TDKLFPIANT 
AQSIYALGVD GLKEYIKTIG LYNNKAINVI KACEILIEKY NGEVPEDREA LESLPGVGRK 
TANVVLNTAF GWPTIAIDTH IFRVANRTKF AMGKNVDQVE EKMLKVVPAE FKVDVHHWFI 
LHGRYTCVAR KPRCGSCLIE ELCEFKEKVY PE