Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2558 |
Symbol | |
ID | 6116855 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3129444 |
End bp | 3131798 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641634088 |
Product | electron transport complex protein RnfC |
Protein accession | YP_001760930 |
Protein GI | 170726904 |
COG category | [C] Energy production and conversion |
COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0669031 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTAACTT TATTGGAACA GATTGATAAA GGGACACTTT GGCGCGCCAT TGGTGGTATT CATCCACCTG AGCAAAAAGT GCTCTCAAAC ACCACAAACA TAGCATCTTT ACCTATTGCT GATGAGTATG TGATCCCCAT ACCTCAAGTG GGTGATAATG CGACATTGTC GGTCTCTGTC GGTGATTATG TGACTAAAGG TGAAGTATTA ACCAATGGCA GCCATTTTGG CTACCTGCCA GTTCATGCCC CCACATCTGG CCATATTAGC CATATTGAGC AACGCCCAAG TAACCACGCA TCTGGCCTGC CAGTACTTAG TTGTGTAATA AAGCCTGATG GACTAGACAC CTTAAGTGAT AAGGTTCACC CTAAGCTTGC ACTTACTGAT ATTGAGCACT TATCGAACCA AGAGATATTG AGTAAGATAC AACAAGCGGG TATCGCGGGC TTAGGTGGAG CAGCTTTCCC AAGTCATATT AAGCTCAACC CAGCCAGTGA TATCGAGTTA CTGATCATTA ATGCGATAGA GTGTGAGCCT TATATCACCT CTGATGACAT GATAATGAGA GAGCAAAGCG ATGCCATAAT GCAAGGTATC GCTATTGTCC ATAGGCTGTT AAAGCCTAAA CGACTTATCA TCGCTATAGA AGATAATAAA CCTCAAGCCA TCTCGATAAT GCAGCAAGCC TTAAGCCGCA GCGTATTGCC AGAGGATGGA GTTAGGATCA CAACCCTACC AACCCTCTAC CCCTCTGGTG GTGAGAAACA GCTTATTCAG ATCTTAACTG GACAGGAGGT GCCTTCTGGC GCCATTCCTG CTCAGCTCGG TATTTTAGTT CAAAATGTCG CCACCTGTTA CGCAATTCAA GATGCCGTTT TGCGAAACTA CCCTCTCATT GAACGCGTGG TGACCATTAC AGGCAATAAT GTGGCTAAAC CTGGCAACTA TTGGCTTCCA ATTGGTACTC CTATCTCTCA CCTTCTGTCT CAAACTGATT TTAAAGGCTT GGATACGGAC AAGGTGATCA TCGGTGGCCC TATGATGGGT TATGCACTTT ACAATGATAG CGCCCCTACA CTTAAAGGCA CTAACTGTAT CCTGCTGCCT AATGCTAATG AGATGGCCCC AGAGCAGAAG GAACTCCCCT GTATTCGTTG TGGTGAATGT GCCGTAGTCT GCCCAGCTCA ACTTTTACCT CAACAACTCT TCTGGCATTC AAAAGCACAA GAGTATGATA AAGCGGTGAG TTATAACCTC AATGACTGTA TTGAATGCGG CTGCTGTAGC TATGTTTGTC CAAGTAATAT TCCTTTAGTC GAGTATTACC GCGTCGCCAA GTCTGCGGTC AAAAATGAAA TTGAAGAGAA GAAGCAAGCA GAGCTAGCTA AACAGAGGTT TGAGCTACGC ACACAGCGCC TTGAAGATGA GAAGCTCGCC CGTGAAGCTA AGCAAAAAGA GGCTGCTGAT AGACGTAAAG CCAATATGTC TGGCACGGAT AAAGATGCCG TCGCTCAGGC TATGGCCAGA ATTAAAGCCA AAAAAGAGGC TGAAGCAAAC AGTGAAGTGA CAACCTCAGC ACCAGCAGAT AAACGCGATG CTGTCGCAGC TGCAGTTGCA CGAGCAAAAG CGAAAAAAGC AGCTCAAACA TCCACTGAGA AGCTTGAATC CTCAACAACA GAGGAACCAG TCGACGATAA AAAAGCCAAG GTAGCGGCAG CAGTCGCCCG GGCTAAAGGC AAAAAAGCAG CACTTAAATC GGCAGATGCT AGTACTATTG AGCCAAAAAC CGATATAGCA ACATCAGAGC CAGCAATCGA TGCGCCTGTT ATCGATGTCG ATGACAAAAA AGCCAAGATA GCAGCTGCTG TGGCCCGTGC TAAAGCCAAG AAAGCAGCAC TTAAGGCAGC TGATGCAAGT GCTACTGAGC CGCAAAGTGA TTCAGAAACA TCAGAGGTAA TACCGGATAC TTCAGTAGCT CAAATCGATG ACAAAAAAGC CAAGATAGCG GCTGCTGTTG CCCGTGCAAA AGCAAAAAAA GCAGCGCTTA AAGCAGCAGA TACAAGCATT AAGCACCAAA ATGATGCCGA AGCATCAGAG TCTGTACCCG ATACTCCAGT TGTAGAAGTC GACGACAAGA AAGCAAAAAT TGCAGCTGCT GTAGCTAAAG CTAAGGCCAA GAAAGCGGCA CTTAACGCTA TTGATCCGCA AAACGATTCA GCAACTTCAG AGCCTGCAAC CGATGCCCCA ATAGCTGATG TTGATGACAA AAAGGCCAAG ATAGCCGCTG CTGTGGCAAA AGCAAAGGCT AATAAATTAG CCAAGCAAGC AAAATTAGAT AATGGGAAGG ACTAA
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Protein sequence | MLTLLEQIDK GTLWRAIGGI HPPEQKVLSN TTNIASLPIA DEYVIPIPQV GDNATLSVSV GDYVTKGEVL TNGSHFGYLP VHAPTSGHIS HIEQRPSNHA SGLPVLSCVI KPDGLDTLSD KVHPKLALTD IEHLSNQEIL SKIQQAGIAG LGGAAFPSHI KLNPASDIEL LIINAIECEP YITSDDMIMR EQSDAIMQGI AIVHRLLKPK RLIIAIEDNK PQAISIMQQA LSRSVLPEDG VRITTLPTLY PSGGEKQLIQ ILTGQEVPSG AIPAQLGILV QNVATCYAIQ DAVLRNYPLI ERVVTITGNN VAKPGNYWLP IGTPISHLLS QTDFKGLDTD KVIIGGPMMG YALYNDSAPT LKGTNCILLP NANEMAPEQK ELPCIRCGEC AVVCPAQLLP QQLFWHSKAQ EYDKAVSYNL NDCIECGCCS YVCPSNIPLV EYYRVAKSAV KNEIEEKKQA ELAKQRFELR TQRLEDEKLA REAKQKEAAD RRKANMSGTD KDAVAQAMAR IKAKKEAEAN SEVTTSAPAD KRDAVAAAVA RAKAKKAAQT STEKLESSTT EEPVDDKKAK VAAAVARAKG KKAALKSADA STIEPKTDIA TSEPAIDAPV IDVDDKKAKI AAAVARAKAK KAALKAADAS ATEPQSDSET SEVIPDTSVA QIDDKKAKIA AAVARAKAKK AALKAADTSI KHQNDAEASE SVPDTPVVEV DDKKAKIAAA VAKAKAKKAA LNAIDPQNDS ATSEPATDAP IADVDDKKAK IAAAVAKAKA NKLAKQAKLD NGKD
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