Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2554 |
Symbol | |
ID | 6116842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3122180 |
End bp | 3124195 |
Gene Length | 2016 bp |
Protein Length | 671 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641634075 |
Product | excinuclease ABC subunit B |
Protein accession | YP_001760926 |
Protein GI | 170726900 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00351574 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0265518 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCAGAAT CATCTTTTCA ACTTGAATCA CAATATGTAC CCGCTGGCGA TCAGCCTAAA GCGATTAAGA AACTAGTAGA TGGCATTGAG TCTGGTTTAG CCTGTCAAAC TCTGTTGGGT GTGACCGGGT CGGGTAAAAC ATTCACTATT GCTAATGTGA TAAAGGAGAT GTCTAGGCCC ACGATTATCA TGGCGCCTAA TAAAACCTTG GCGGCACAGC TTTATGGGGA GATGAAGGAG TTTTTCCCCC ATAACGCGGT CGAGTACTTT GTCTCCTACT ATGACTATTA CCAGCCTGAA GCGTACGTTC CTTCCACGAA TACCTTTATT GAGAAAGATG CATCGGTCAA TGCCCATATT GAGCAGATGC GTCTGTCAGC GACTAAAGCT TTGTTAGAGA GAAAAGATGT TGTGCTGATA GCTTCAGTGT CAGCTATCTA TGGTCTAGGC GACCCAGACT CATATATGAA GATGTTATTG CACCTAAGGC AGGGCGATAC TATGGGTCAG AGGGATATAT TACATCGGCT TAGTGAGCTG CAATATACCC GTAATGATAT TGAACTCAAA CGAGGCACTT ACCGTGTTAG AGGGGAAGTG ATTGATATTT TCGCTGCTGA CTCAGATAGC AATGCGATCC GTGTTGAGCT GTTTGATGAT GAGATTGAAA GGTTAAGCTT ATTTGACCCT TTAACTGGTC ATATTTTGCA GCGGATCGCA CGCACGACTG TTTACCCTAA GAGCCACTAC GTAACCCCAA GAGAGAAAAT ATTAGCGGCC AGCGAAGAGA TTAAAGAGGA GCTTAGGGAG CGGAAGAAGC AACTACTCGA TAACAACAAA TTGATTGAGG AGCAGCGGAT CACCGAGCGG GTACAATATG ATATTGAGAT GATGGTAGAG CTTGGTTACT GCTCTGGCAT CGAAAACTAC TCAAGATACC TCTCTGGGCG TGAAGAGGGA GCTGGGCCGC CAACTCTGCT TGATTATCTA CCTGATGACG GTTTGCTTAT CATTGATGAG TCCCATGTGA CCGTGCCACA AATTGGGGCT ATGTATAAAG GTGATCGCTC CAGAAAGATG AACTTGGTTG AGTATGGTTT TCGCTTGCCC TCTGCGTTGG ACAATAGACC CCTTAAATTT GAAGAGTTTG AAAGTCTGAT GCCCCAAACT ATCTTTGTCT CTGCTACGCC AGCAAATTAT GAGATAGAGA AGAGTGATGG TGAGATTGCT GAACAGGTGA TTAGGCCGAC TGGTTTGCTA GACCCTGAGC TTGAAGTCCG TCCCGTGGCG ATTCAGGTTG ATGATCTATT ATCTGAGGTT AGGAAGAGAG TTAAGGTTCA AGAGCGTGTG TTGGTGACGA CCTTAACTAA GCGCATGTCA GAGGATCTCA CTGAATACTT AGATGAGCAT GGGGTTAAAG TAAGGTATCT ACACTCAGAT ATCGATACTG TCGAGCGAGT GGAGATCATC CGCGATCTCA GATTAGGTGT TTTTGATGTA CTTGTTGGTA TTAACTTGCT TAGAGAGGGA CTTGATCTGC CTGAGGTCTC GTTAGTCTGT ATTCTTGATG CGGATAAAGA GGGTTTTTTA CGTTCAGAGC GCTCATTAAT ACAGACCATA GGTCGTGCGG CTCGTAATAT GAATGGTAAA GTTATTCTTT ACGCCGATAA GATCACAGAT TCGATGGCAA AAGCGATGGG TGAAACTGAA CGTAGGCGTA AGTTGCAACA TCAGTTCAAT CTCGATAATG GTTTAGTACC AAAAGGCGTT TCTAAGAAGA TCACCGACGT GATGGATGTG GGTGAGAAAG AGTATGTGCA AAATGATCTT GCTTCGATAA GAGATATTGC CGAATCCAAA GGCGACTACA AAGTGAATGA TGTGGCGAGC ATTAGCCATC AGATCGATAC GTTAGAGAAA AAGATGCATG AACATGCTAA AAACCTGGAG TTTGAGCAAG CAGCCGCAGT TCGAGATCAG GTCAGGCGTC TTCATGATGA GTTGATTAAA GCGTAA
|
Protein sequence | MAESSFQLES QYVPAGDQPK AIKKLVDGIE SGLACQTLLG VTGSGKTFTI ANVIKEMSRP TIIMAPNKTL AAQLYGEMKE FFPHNAVEYF VSYYDYYQPE AYVPSTNTFI EKDASVNAHI EQMRLSATKA LLERKDVVLI ASVSAIYGLG DPDSYMKMLL HLRQGDTMGQ RDILHRLSEL QYTRNDIELK RGTYRVRGEV IDIFAADSDS NAIRVELFDD EIERLSLFDP LTGHILQRIA RTTVYPKSHY VTPREKILAA SEEIKEELRE RKKQLLDNNK LIEEQRITER VQYDIEMMVE LGYCSGIENY SRYLSGREEG AGPPTLLDYL PDDGLLIIDE SHVTVPQIGA MYKGDRSRKM NLVEYGFRLP SALDNRPLKF EEFESLMPQT IFVSATPANY EIEKSDGEIA EQVIRPTGLL DPELEVRPVA IQVDDLLSEV RKRVKVQERV LVTTLTKRMS EDLTEYLDEH GVKVRYLHSD IDTVERVEII RDLRLGVFDV LVGINLLREG LDLPEVSLVC ILDADKEGFL RSERSLIQTI GRAARNMNGK VILYADKITD SMAKAMGETE RRRKLQHQFN LDNGLVPKGV SKKITDVMDV GEKEYVQNDL ASIRDIAESK GDYKVNDVAS ISHQIDTLEK KMHEHAKNLE FEQAAAVRDQ VRRLHDELIK A
|
| |