| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2520 |
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| Symbol | |
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| ID | 6116804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3079716 |
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| End bp | 3082307 |
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| Gene Length | 2592 bp |
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| Protein Length | 863 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634037 |
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| Product | type VI secretion ATPase |
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| Protein accession | YP_001760892 |
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| Protein GI | 170726866 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGTA TTGAATTAAG TACGCTTATT ACTAAGTTAA ATCCAATCAG CAAGCTTGCT
ATGGAAGAGG CGGCTTCTTT GTGTATCGCG AGGCAGAATG AGGAGATAAC CCTATCTCAT
CTGCTGTATA GCTTGTTAGA AAATCCACTG TCCGATGTGA GAGTACTACT TAAGCACGCT
GAGTGTGACA TTAGTGAGCT AAAAACACTT TTAGGTAATA GTTTACCAAC TGGGGATACC
TTAGATACCT ACCCATCATT TTCTCCACTT TTAGTTGAGT TACTGCAAGA TGCTTGGTTG
CTGTCCACCA CTGAATTACA AGAGGCTGAG CTGAGATCCG GTAGCCTTTT CCTCGCCGCA
TTAATGCAAT CGAGCCGTTA CCTCCCTTTT GAGCTTGTTA ATTTCTTCGC TGATATTAAC
CGAGAATCAT GGCGTAAAAA TTTCGCAAGA TTAACAGCTA GCTCTTCAGA ATCGAAAGCG
CGCGAAGCCT CTACTGGCCG TCAGCCTGTG CAAGATAGTG CCAACAGTGC ATTAGATAAA
TTCACCACTA ACTTTACTCA ATTTGCAGAG GATGGCGAGT TAGACCCAGT GCTGTGCCGT
GACGATGAGA TCAACCTGAT GATTGATATT CTATGTCGCC GCCGTAAAAA CAACCCTATC
GTTGTCGGTG ATGCCGGTGT GGGTAAAAGC GCTGTGGTAG AGGGACTGGC TTTGCGTATT
GTTGCTGGTA ATGTGCCTGA TTCCTTAAAA GGAGTGCAAC TGCTGTCGCT GGATTTAGGC
TTACTTCAAG CTGGAGCTTC GGTGAAAGGG GAGTTTGAAA AGCGTTTAAA AGGGGTGATT
GATGAAGTTA AAAACTCAGC CATTCCCATT ATTCTTTTTA TCGATGAAGC ACACACCTTA
ATCGGCGCTG GCAATCAAGA GGGGGGAGGC GATGCCGCCA ACTTGCTAAA ACCTGCCTTA
GCACGGGGTG AGTTACGTAC AATTGGTGCA ACGACGTGGA AAGAGTACAA GAAATATTTT
GAAAAAGATC CCGCGCTCAC TCGCCGTTTT CAGTTGGTAA AATTGGATGA ACCTAGCGCC
GAACAAGCGG TTGTGATACT GCGTGGTCTA CATGGTGTGT ACGAGTCTGA ACATAAAGTG
TTGATCCAAG ATTGCGCGCT GAAAGCTGCG GCGCATCTAT CAAGTCGTTA CCTTTCTGGG
CGACAACTGC CAGATAAAGC CATCGATGTG CTCGATACTG CATGTGCGCG CATTGCCATT
AATCTTACCT CTCCACCTCG ATATCTTGCA GAGCTGCAAG GCATTATTCA TCAGACAGAA
GTGGAGATCT CACTGTTATT GAGACAGAGA ACCATAGGCC AGAGTATTGA TGAGGAGCAT
CTTGAGCTAT TAAGAGAACG AGTGACGGAT GCAATGTCAG AGCATGAATC ATTAGAGTCG
ACTTGGAGGC AGCAGCAGGA GCTAGTCTCT AAAATCATCG AGCTGAGAGG CGCGATATTA
GCAGGTGACG CTGATGATGT GCCCCAAGAG TTGTGTATTG AACTCAATGA CGTTGAGGAG
CAACTTGAGT TACTTAGTGC CAAGAATCGT TTAGTTATTC CCCAGGTGGA TGAACAGCAA
ATTGCGGCTG TGATTGCTGA TTGGACCGGT GTGCCAGTTG AGCAGATGAA CAGCGATGAG
CTGCATAAAA TCACCCATCT GCCTCAGCTG CTTGGAGAGT CATTAAAAGG ACAAGATATC
GCCATCTCTC GTCTGCATCA AAATATGCTG ACAGCAAGAG CCGATCTGCG TAAAGCTGGT
CGTCCCAAAG GTGCATTTTT GCTCGTTGGT CCAAGTGGTG TGGGTAAAAC CGAGACCGTG
ATTCAAATTG CTGAGCAGCT CTATGGCGGT AAGCAGTTTC TAACGACAAT CAATATGTCC
GAATACCAAG AGAAGCACAC GGTATCTCGA TTAATTGGCT CACCTCCAGG ATACGTTGGC
TTTGGTGAAG GAGGTGTATT AACTGAATCC ATTCGTAAAA TGCCTTACTC CATTGTACTG
CTCGATGAAG TTGAGAAGGC GCACCCCGAT GTGTTGAACC TTTTCTATCA AGCATTCGAT
AAAGGGGAGC TTGCCGATGG TGAGGGGCGT CTTATCGATT GTCAGAATAT TCTCTTCTTT
TTGACCTCCA ACTTAGGCTA TCAAACCATC GTTGATAATG CACAAACGCC AGAGCTGATT
GAGAACAGTC TCTATCCTGA GCTTTCGGCA TTTTTTAAAC CTGCTCTGCT TGCTCGTATG
GAGGTTGTGC CCTATCTACC ACTTGGTGAA AACGTGCTGC GTGAAATTAT TGCTGCCAAG
TTAGCCGCGC TGACCCAACG ACTTGAGCTT AGATATAAAG CACAGGTGAG CTGCGATCAA
GCACTTACCG ATGAGATCAT CAGACGGACA ACCCGTACTG AAAATGGTGC GCGTATGTTA
GAGGCGATCA TCGATGGTCA GATGTTACCT CCTATTGCAT TGGCTCTGCT TAATAAATTA
GCAGATAAAG AGCCTGTGCA AACCATTCGA TTAAGTTGTG TTGATGGTGA GTTTGTCGGA
GAGGTGAGTT AG
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| Protein sequence | MIRIELSTLI TKLNPISKLA MEEAASLCIA RQNEEITLSH LLYSLLENPL SDVRVLLKHA
ECDISELKTL LGNSLPTGDT LDTYPSFSPL LVELLQDAWL LSTTELQEAE LRSGSLFLAA
LMQSSRYLPF ELVNFFADIN RESWRKNFAR LTASSSESKA REASTGRQPV QDSANSALDK
FTTNFTQFAE DGELDPVLCR DDEINLMIDI LCRRRKNNPI VVGDAGVGKS AVVEGLALRI
VAGNVPDSLK GVQLLSLDLG LLQAGASVKG EFEKRLKGVI DEVKNSAIPI ILFIDEAHTL
IGAGNQEGGG DAANLLKPAL ARGELRTIGA TTWKEYKKYF EKDPALTRRF QLVKLDEPSA
EQAVVILRGL HGVYESEHKV LIQDCALKAA AHLSSRYLSG RQLPDKAIDV LDTACARIAI
NLTSPPRYLA ELQGIIHQTE VEISLLLRQR TIGQSIDEEH LELLRERVTD AMSEHESLES
TWRQQQELVS KIIELRGAIL AGDADDVPQE LCIELNDVEE QLELLSAKNR LVIPQVDEQQ
IAAVIADWTG VPVEQMNSDE LHKITHLPQL LGESLKGQDI AISRLHQNML TARADLRKAG
RPKGAFLLVG PSGVGKTETV IQIAEQLYGG KQFLTTINMS EYQEKHTVSR LIGSPPGYVG
FGEGGVLTES IRKMPYSIVL LDEVEKAHPD VLNLFYQAFD KGELADGEGR LIDCQNILFF
LTSNLGYQTI VDNAQTPELI ENSLYPELSA FFKPALLARM EVVPYLPLGE NVLREIIAAK
LAALTQRLEL RYKAQVSCDQ ALTDEIIRRT TRTENGARML EAIIDGQMLP PIALALLNKL
ADKEPVQTIR LSCVDGEFVG EVS
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