Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2517 |
Symbol | |
ID | 6116801 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3076114 |
End bp | 3077517 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641634034 |
Product | type VI secretion-associated protein |
Protein accession | YP_001760889 |
Protein GI | 170726863 |
COG category | [S] Function unknown |
COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.29627 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACATC AATATATTGA AAAGATAGCG AAACCCATTG CTGGAGATAA TCCTGTCGGT GAAAGACTTT TTGACGATGT TTTGTTTGAT TTTGTCGAAG GTCAATTGAT GAAGGTTGGA TCTCTTTCTC ATGCAGAGGT TCAGTGGGGA GAGGTGGAAA CCGCTGTGGT CTCATTATTG GAGACTCGCA CTAAAGATCT AAAGCTCATC ATCTATTTGA TGCAATGCCT TCAATACCAA GCCAGCCTTG AGCGATTTAG TTTATCCCTT GGTGTTTTAG ATATCTTCAT GAAGGAGTAT TGGCTGACTT GCTACCCTGC ACCAGGGGAT AGGGGCGTAC TACCTAGGCG CAAATATTTC TCTCAGATTG TTCAGCGAAC GGTAAAGTCT GGGGAAAGTA TCGATACACA ATTTTGTGAG CCACAAAGTA AAGAGTTGCT GCTTAAGCGC TTGTCCAGCT TACTCGACTC GGCTGAGAAG TTGGAGCTGC CTACGGAGGT GCTCTCCTCA TTAGCAACAA GACTAACCAG ACAGTTAGAG CAAAATGAAA ACAGAGTATC GGCAACCAAG TCGAACGCGG TCAGTGAACC TGCTGAGGAG GCGGTAAGCA GAAGTGCGCC TAAGTTAGAG ATAGACTCGA GCAATGATAA AGCGACCAAA CAAACCTTGC TTAAAGTGGC TGATTTTATC TCTGAGTTTG AAACTGGGAC AGGACTAAGC TTGCGGATCC GTCGATTTGC TACTTGGTCA TCAGTGAGCG GTGTGCCAGA AAATGCCAAT GCTGCTGGTG AAACCAGTTT GATGCCGATT GCAGCCGATA GGGTCAGTGA GTATCAAAGT CAGCTAGAGA AAGGGGCGGA TATGGCGCTG CTTAGGCGCG TTGAGTTGAG CCTGACGTTA AGCCCTTTTT GGTTAGATGG ACACCACTTA AGTGCCCAAA TTGCCATGGC GCTTGGGCAG CTAGAGTGGG CTAAGGCGAT ACATGAAGAC ACTGCGGCCT TTGTTGAACG TCTGCCTAAG CTACTCATGA TGTCATTTAA AGGCGGCATT CCTTTTGCCA ATGCCGAGAC TCGAACTTGG TTAGATGAAG GTTACGGACG CAACAGTTTT GAAGGGAACG GGCAGGGAGT TGAGCAAAAA AGGGCTGAGG TGGTTGAGCT GGCAGATTCG GGTGGCTTAT CGGTCGCTTT TGCCAGTTTG AATGAACATC TACAGCAAGC ATCAGAGCCT AGAGATGCAT TTTATCTACG TCTGCTGGGT GCAGATCTAA AACAGAGTCA TCAATTGTCA GCGATGGCAA CGGTGGATTA TCAAGTCTTG TATCAACAAG CAAGTCATAT GGTCTTAGCT GATTGGGAGC CAACCTTGAT GGCTCGATTA AAACAAAAAG CAAATTTGGA TTAA
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Protein sequence | MTHQYIEKIA KPIAGDNPVG ERLFDDVLFD FVEGQLMKVG SLSHAEVQWG EVETAVVSLL ETRTKDLKLI IYLMQCLQYQ ASLERFSLSL GVLDIFMKEY WLTCYPAPGD RGVLPRRKYF SQIVQRTVKS GESIDTQFCE PQSKELLLKR LSSLLDSAEK LELPTEVLSS LATRLTRQLE QNENRVSATK SNAVSEPAEE AVSRSAPKLE IDSSNDKATK QTLLKVADFI SEFETGTGLS LRIRRFATWS SVSGVPENAN AAGETSLMPI AADRVSEYQS QLEKGADMAL LRRVELSLTL SPFWLDGHHL SAQIAMALGQ LEWAKAIHED TAAFVERLPK LLMMSFKGGI PFANAETRTW LDEGYGRNSF EGNGQGVEQK RAEVVELADS GGLSVAFASL NEHLQQASEP RDAFYLRLLG ADLKQSHQLS AMATVDYQVL YQQASHMVLA DWEPTLMARL KQKANLD
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