| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2499 |
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| Symbol | prpB |
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| ID | 6116783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3049974 |
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| End bp | 3050852 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641634016 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001760871 |
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| Protein GI | 170726845 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.741837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.047618 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTGCAG GGAAAAAATT TCGTCAGGCA TTAGCAGATA ACAAGCCACT GCAGATAGTC
GGTACCATCA ATGCTTACAG CGCAATGATG GCAAAACAGA TTGGGCATCA GGCTATCTAC
CTATCAGGTG GTGGCGTCGC TAATGCATCC TATGGATTGC CAGATCTTGG TATGACATCA
CTTAACGATG TGATTGTTGA TGTTCAGCGC ATCACCTCAG CTTGCGATCT TCCTCTGATG
GTGGATATTG ATACGGGTTG GGGCGGGGCA TTCAATATTG CCAAGACTAT TCGTGATATG
GAGAAAGCTG GTGCAGCTGC TGTTCATATG GAAGATCAGG TTGCTCAAAA ACGCTGTGGT
CATCGCCCGA ATAAAGAGAT CGTCTCTACA GAGGAGATGG TAGATCGTAT CAAGGCGGCT
GTTGATGCCC GTACCGATCC TGACTTCTTT ATCATGGCTC GTACCGATTC ATTCGCTCAA
GAGGGGATCG AGGCTGCCAT TGAACGTGCT AAAGCCTATG TGGCTGCAGG CGCAGACGGG
ATCTTTGCCG AAGCGGTTAA AACCGAGGAG CACTACCGCG CATTTTCAGA AGCGTTAGAT
GTGCCTATCT TGGCTAACAT TACCGAGTTC GGCCAAACTG AGCTGTGGAA CAAAGCAGAG
TTAGGCGAGT GGGGCGCAGA CATGGTGCTC TACCCGTTAA GTGCATTCAG GGCGATGAAT
AAAGCTGCTG AGATGGTCTA TACATCGATA CTTGAAAATG GTGACCAAAA AGCGGTAGTT
GATTCGATGC AAACTCGCAT GGATCTCTAT AATTACCTTG GTTACCACGA CTATGAGCAG
AAATTAGATA GTCTTTTTGC TGAAGGTAAG AATCTGTAA
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| Protein sequence | MSAGKKFRQA LADNKPLQIV GTINAYSAMM AKQIGHQAIY LSGGGVANAS YGLPDLGMTS
LNDVIVDVQR ITSACDLPLM VDIDTGWGGA FNIAKTIRDM EKAGAAAVHM EDQVAQKRCG
HRPNKEIVST EEMVDRIKAA VDARTDPDFF IMARTDSFAQ EGIEAAIERA KAYVAAGADG
IFAEAVKTEE HYRAFSEALD VPILANITEF GQTELWNKAE LGEWGADMVL YPLSAFRAMN
KAAEMVYTSI LENGDQKAVV DSMQTRMDLY NYLGYHDYEQ KLDSLFAEGK NL
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