Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2497 |
Symbol | |
ID | 6116781 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3045961 |
End bp | 3048570 |
Gene Length | 2610 bp |
Protein Length | 869 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641634014 |
Product | aconitate hydratase |
Protein accession | YP_001760869 |
Protein GI | 170726843 |
COG category | [C] Energy production and conversion |
COG ID | [COG1048] Aconitase A |
TIGRFAM ID | [TIGR01341] aconitate hydratase 1 [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR02333] 2-methylisocitrate dehydratase, Fe/S-dependent |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00662485 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAATACAA GTTACCGTAA ATCTTTACCG GATACCGATC TCGATTACTT CGACACTCGT GCCGCCGTTG AGGCTATCAG CCCTGGTGCC TATGATAAGC TGCCGTATAC CTCCCGTGTA TATGCTGAAA ACCTCGTTCG CCGCTGTGAG CCTACAAAAT TAACAGATTC ATTAAAACAG ATTATTAACC GTCAACGTGA TCTGGATTTC CCTTGGTATC CAGCACGTGT TGTTTGCCAT GACATTTTAG GTCAGACAGC GCTGGTGGAT CTTGCTGGAT TGCGCGATGC CATTGCTGAT AAAGGTGGCG ACCCTTCCAA GGTAAATCCT GTTGTACCGA CACAGCTGAT TGTGGATCAC TCATTAGCGG TAGAGCATGC AGGTTTTGAG AAGGACGCGT TCGATAAGAA CCGCGCCATT GAAGACAGAC GTAATGACGA TAGATTTCAT TTTATCAACT GGACCAAAAC AGCATTTAAG AATATCGATG TGATCCAGCC GGGTAACGGC ATTATGCATC AGATAAATCT TGAGAAGATG TCACCTGTGA TTCAAGCTCG CGATGGCGTG GCTTTTCCAG ACACCTTGGT AGGAACAGAC AGTCATACTC CCCATGTGGA TGCATTAGGT GTGATAGCAA TTGGAGTCGG TGGACTTGAA GCTGAGAGTG TCATGCTTGG CCGTCCCTCG TATATGCGTC TTCCTGATAT CGTCGGTGTT GAGCTGGTGG GTAAGCGTCA AAGTGGGATC ACTGCAACCG ATATCGTACT GGCTATCACA GAGTTTTTAC GCAGCGAGAA GGTGGTGTCT ACCTATCTTG AATTCTTCGG TGAAGGCGCT TTCGCGCTTA CACTTGGAGA CCGAGCGACT ATCTCAAATA TGACGCCTGA GTTTGGCGCT ACAGCCGCCA TGTTCTACAT CGATGATAAA ACCATAGACT ACCTTAAGTT GACTGGTCGA GATGATGCTC AAGTAAAACT GGTTGAAACC TATGCTAAAG CCAATGGGTT ATGGGCTGAT AGCCTTAAAA ATGCTGAGTA TGAGCGGGTG CTCAAGTTTG ATTTATCATC GATTGGCCGT AATATTGCGG GACCTTCAAA CCCGCACCGC CGTGTTGCTA CCAATGAGCT TGCTAAGAGT GGTATCGCAG GTGTGGTAGA GAACGAAGAG GGCTTAATGC CCGACGGCGC TTGTATCATT GCAGCCATTA CTAGCTGTAC CAACACCTCA AACCCTCGAA ATGTGATAGC AGCCGGTCTG CTTGCGCGTA ACGCGAATGC CAAAGGTTTA ACGCGTAAGC CTTGGGTTAA AACCTCTTTA GCACCAGGAT CCAAAGCGGT ACAACTCTAC CTTGAAGATG CCAAGCTGTT ACCTGAGCTC GAAAGTCTTG GTTTTGGTAT CGTTGGTTTT GCCTGCACCA CTTGTAATGG CATGAGTGGG GCGCTTGACC CTGTTATCCA ACAGGAGGTA ATCGACAGAG ATCTTTACGC CACAGCAGTG CTTTCTGGTA ATCGTAATTT CGATGGCCGT ATTCATCCCT ACGCTAAACA AGCGTTCTTG GCTTCACCAC CGTTAGTGGT GGCCTACGCC ATTGCAGGGA CCATACGCTT CGACATTGAG AGAGACAGCT TAGGCACAGA CTCTCAAGGT AATGAGATCA CACTTAAAGA TATCTGGCCA TCGGATGAAG AGATTGATGC GGTCGTCAAG GCGAGCGTAA AACCAGAACA GTTCCGTAAA GTGTATGAGC CTATGTTCGA CATTAAAGTA GAGTATGGAG CAAACAATGA TCCGCAGTAT GATTGGCGAC CACAGAGTAC CTATATTCGT CGTCCTCCCT ATTGGGAAGG AGCACTGGCA GGTGAGAGAA GTATGAAAGG GATGCGTCCC TTAGCAGTAC TGGGTGATAA CATCACAACA GACCACTTGT CTCCTTCAAA TGCGATCATG CTCGACAGTG CTGCTGGTGC GTATTTAGAT AAGATGGGTC TACCTGAGGT GGACTTTAAC TCCTACGCAA CTCACCGCGG TGATCACTTG ACTGCACAGC GGGCCACTTT TGCTAATCCT AAACTCTTTA ATGAGATGGT CACGACATTG GGCAAAAATG GAGAGACTGA AATTAAGCAG GGATCATTAG CTCGTATTGA GCCTGAGGGT GAAGTCTCAC GCATGTGGGA GGCGATTGAA ACTTACATGG ATCGTAAACA GCCACTGATC ATCATTGCTG GTGCTGATTA TGGTCAAGGC TCAAGCCGCG ACTGGGCCGC TAAAGGTGTT CGTCTTGCTG GCGTTGAAGT GATTGTGGCC GAAGGGTTTG AGCGTATTCA TCGAACTAAT TTAGTGGGAA TGGGCGTGTT ACCCCTTGAG TTCACCAATG GCGAAAACCG CCATACGTAT CAAATCGATG GTACAGAGAC CTATGATGTG GTTGGAGATC GAACTCCTGG TGCAAGGTTA ACGCTTATTA TCAACCGTAA AAACGGCGAG TCCGTCGAGG TTCCAGTTAA GTGTCGCTTA GATACCGCAG AGGAGGTCTC TATTTATGAA GCTGGCGGTA TTTTGCAGCG TTTTGCTCAA GACTTCCTTG AATCTTCATC TGCGGCCTAA
|
Protein sequence | MNTSYRKSLP DTDLDYFDTR AAVEAISPGA YDKLPYTSRV YAENLVRRCE PTKLTDSLKQ IINRQRDLDF PWYPARVVCH DILGQTALVD LAGLRDAIAD KGGDPSKVNP VVPTQLIVDH SLAVEHAGFE KDAFDKNRAI EDRRNDDRFH FINWTKTAFK NIDVIQPGNG IMHQINLEKM SPVIQARDGV AFPDTLVGTD SHTPHVDALG VIAIGVGGLE AESVMLGRPS YMRLPDIVGV ELVGKRQSGI TATDIVLAIT EFLRSEKVVS TYLEFFGEGA FALTLGDRAT ISNMTPEFGA TAAMFYIDDK TIDYLKLTGR DDAQVKLVET YAKANGLWAD SLKNAEYERV LKFDLSSIGR NIAGPSNPHR RVATNELAKS GIAGVVENEE GLMPDGACII AAITSCTNTS NPRNVIAAGL LARNANAKGL TRKPWVKTSL APGSKAVQLY LEDAKLLPEL ESLGFGIVGF ACTTCNGMSG ALDPVIQQEV IDRDLYATAV LSGNRNFDGR IHPYAKQAFL ASPPLVVAYA IAGTIRFDIE RDSLGTDSQG NEITLKDIWP SDEEIDAVVK ASVKPEQFRK VYEPMFDIKV EYGANNDPQY DWRPQSTYIR RPPYWEGALA GERSMKGMRP LAVLGDNITT DHLSPSNAIM LDSAAGAYLD KMGLPEVDFN SYATHRGDHL TAQRATFANP KLFNEMVTTL GKNGETEIKQ GSLARIEPEG EVSRMWEAIE TYMDRKQPLI IIAGADYGQG SSRDWAAKGV RLAGVEVIVA EGFERIHRTN LVGMGVLPLE FTNGENRHTY QIDGTETYDV VGDRTPGARL TLIINRKNGE SVEVPVKCRL DTAEEVSIYE AGGILQRFAQ DFLESSSAA
|
| |