Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2179 |
Symbol | |
ID | 6116449 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2671657 |
End bp | 2672742 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641633687 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001760556 |
Protein GI | 170726530 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000248395 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.140593 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA TAATAATAAC GTTAATCCTA ATCTCCCTTG CCTTTCTGGC TTATCAAAAG CTATACCCAG CTAATGAAAC CTTAGTGAAA AAGCCAAGAC CCATCGCCAA TGTGGTGGTT GCCAAGGCCG CAATTGAGCC GATAAGGGAT GAGGTCGAGG CGCTAGGTAC CAGCAAAGCA AATGAATCCG TGACAGTGAC GCCTAAGGTG ACTGAGGTGG CAACAGCGCT CTTTTTTGAT GATGGTGACG TGGTTAAAAA GGGGCAGCAG TTAGTCCAGC TTCAAGATAG AGAGCAGCTT GCACGTGTTA CAGCAGCTAA AGTGCGTGTA AATGAGCATA TGCGCGAGCT AGATAGAATA CGCTCTCTTG TGACCAACCA AACTATCGCT GAGTTGGAGC GAGACAGATT ACAGACTTTA ATTGATACTG CAAAAGCTGA GTTGGCTCAG GCAAGTTCAG CCCTCAATGA CAGGCAGATC AGTGCACCTT TTGAGGGGCG CTTAGGTCTG CGACAGATAA GTGTTGGTAG CTTACTCTCT CCAGGAACAG TGATCACAAC ATTGGATGAT ATCTCAGTGA TTAAGCTGGA TTTCTCTGTT CCTGAGCGTT TTTTGCCTTC ACTTGCTGTC GGTAAAAATG TTGAAGCCAC CGCCATGGCG TTTCCCGATG AACTGTTTAG CGGGAAAGTT ATCTCTATCG ATAGCCGCGT TAATCCAACC ACACGAGCAG TGATTGTGCG TGCTGAACTT CCTAATCCTA AACACAGACT ACTGCCTGGT ATGTTGATGA AGGTTAAATT GATTAAAGAG AGCAGAGATG CACTCATTTT GCCTGAGTCA GCCATTATTC CTATACAGGA TAGACACTAT GTTTATTTAG TCGATGGGGA TGACAAGGTT GTGAAAAGAG AGGTGCACCT AGGATTACGT AAACGCGGCT GGGTAGAAAT TCTTGATGGG ATCAACTTAG GTGAGCAGGT GGTGATCCGC GGGATATTGA AAGTGAGACC CGGTGATAAA GTTAAAGTCC AATTCAGCGA AAAATTTAGC TTTTTAGAAA ATGCTAAGGT TGGGCCAACT GTATGA
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Protein sequence | MKKIIITLIL ISLAFLAYQK LYPANETLVK KPRPIANVVV AKAAIEPIRD EVEALGTSKA NESVTVTPKV TEVATALFFD DGDVVKKGQQ LVQLQDREQL ARVTAAKVRV NEHMRELDRI RSLVTNQTIA ELERDRLQTL IDTAKAELAQ ASSALNDRQI SAPFEGRLGL RQISVGSLLS PGTVITTLDD ISVIKLDFSV PERFLPSLAV GKNVEATAMA FPDELFSGKV ISIDSRVNPT TRAVIVRAEL PNPKHRLLPG MLMKVKLIKE SRDALILPES AIIPIQDRHY VYLVDGDDKV VKREVHLGLR KRGWVEILDG INLGEQVVIR GILKVRPGDK VKVQFSEKFS FLENAKVGPT V
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