Gene Swoo_1876 details

Gene Information

• Locus tag: Swoo_1876
• ID: 6116139
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella woodyi ATCC 51908
• Kingdom: Bacteria
• Replicon accession: NC_010506
• Strand: +
• Start bp: 2318745
• End bp: 2319107
• Gene Length: 363 bp
• Protein Length: 120 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 641633379
• Product: nitrite reductase (NAD(P)H), small subunit
• Protein accession: YP_001760255
• Protein GI: 170726229
• COG category: [P] Inorganic ion transport and metabolism; [R] General function prediction only
• COG ID: [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
• TIGRFAM ID: [TIGR02378] nitrite reductase [NAD(P)H], small subunit

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.462051
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 5
• Fosmid unclonability p-value: 0.00039945
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAGATGGG TTGATATTTG TGATGAGAGT GCACTGCCAA GGTTTGGCGG AATTGCTGCA 
TGGTGTGAAA ACCGCGCTGT TGCCATTTTT AATTTAGGTG AGCAGGGGCT CTATGCCATG 
AGCAATACTG ACCCTGCTAC AGGAGTCAGT TTACTCTCCC GTGGACTTAT CTGTGAATTG 
GAAGGGGATA TTTGGGTCGC ATCGCCACTG CATAAGCAGC ACTACAGTTT AACTAGTGGT 
GAATGCATTG AAGATGAAAG CTTACGTGTT CAGCTTTACC CCATCAGCTG TGAAGGAGGC 
AGAGTTTGGC TTCAAACGGC CAGTGAAAAA AGTGAACCAA GGGTTTTAAG GAGTGCGATA 
TGA 

 

Protein sequence

MRWVDICDES ALPRFGGIAA WCENRAVAIF NLGEQGLYAM SNTDPATGVS LLSRGLICEL 
EGDIWVASPL HKQHYSLTSG ECIEDESLRV QLYPISCEGG RVWLQTASEK SEPRVLRSAI