| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1759 |
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| Symbol | secF |
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| ID | 6116022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2184789 |
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| End bp | 2185736 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641633262 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001760138 |
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| Protein GI | 170726112 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.020465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0122623 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTATCAGA TTTTATCAAT AAAAGGCACG ATCAACTTCC TTCGTCATGC GTTGCCAATC
AGCATGCTTT CACTGCTATT AGTGTTGGGA TCGCTGACAT CACTGGCAAC TAAAGGTATC
AACTGGGGAT TGGATTTTAC CGGTGGTACA GTTGTAGAGC TTGAGTTTTC ATCGCCAATT
GATCTGGAGA TACTGCGAGG TAAGTTAACC AGTGTAGAGA CCGATGGCGC TGTAGTACAA
AACTTTGGCT CTAGTCGTGA TGTACTGACT CGTCTTCCTG TTAAGGAAGG GGTTGCAACT
GACACTCAGG TTGCCCAAGT TATGGAAGCG GCAACGGCAC TGGATCCACA AGTGATCCAA
AAGCGTGTTG AAGTTGTTGG TCCTCAGATA GGTAAAGAGC TGGCAGAGCA GGGTGGATTA
GCGGTATTAG TTGCGCTTAT CTGTATTCTT ATCTATGTCT CTTTCCGATT CGAATGGCGC
TTAGCGCTAG GGTCTGTAGC GGCATTGGCT CACGATGTTA TTATTACCTT GGGCGTGTTT
TCCTTGCTCC AGTTGGACTT TGATTTAACT GTGCTTGCAG GCGTACTAAC GGTTGTTGGT
TACTCGCTTA ACGATACGAT TGTTGTATTT GACCGTATTC GTGAAAACTT CCTTAAGATG
CGTAAAAGCA GTCCTGAAGA GGTGGTCAAC ACCTCTATTA CTCAGACAAT GAGTCGTACT
ATCATCACAA CCGGTACGAC CTTAGTCGTG GTTGTTGCAC TGTTCCTTAA GGGCGGCACC
ATGATCCACG GCTTTGCGAC CGCATTGTTG ATGGGTATCT TTGTCGGTAC TTTCTCATCT
ATCTATGTGG CGAGTTTCTT AGCGATTAAG CTGGGAATTA ACCGCGAGCA TATGATGCCT
GTAGAGATAG AAAAAGAGGG CGCGGATCAA GACGCATTGA TGCCATAA
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| Protein sequence | MYQILSIKGT INFLRHALPI SMLSLLLVLG SLTSLATKGI NWGLDFTGGT VVELEFSSPI
DLEILRGKLT SVETDGAVVQ NFGSSRDVLT RLPVKEGVAT DTQVAQVMEA ATALDPQVIQ
KRVEVVGPQI GKELAEQGGL AVLVALICIL IYVSFRFEWR LALGSVAALA HDVIITLGVF
SLLQLDFDLT VLAGVLTVVG YSLNDTIVVF DRIRENFLKM RKSSPEEVVN TSITQTMSRT
IITTGTTLVV VVALFLKGGT MIHGFATALL MGIFVGTFSS IYVASFLAIK LGINREHMMP
VEIEKEGADQ DALMP
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