Gene Swoo_1758 details

Gene Information

• Locus tag: Swoo_1758
• Symbol: secD
• ID: 6116021
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella woodyi ATCC 51908
• Kingdom: Bacteria
• Replicon accession: NC_010506
• Strand: +
• Start bp: 2182926
• End bp: 2184776
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 641633261
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001760137
• Protein GI: 170726111
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000231591
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 7
• Fosmid unclonability p-value: 0.0025184
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

GTGTTAAATA AATATCCAAT GTGGAAGAAC CTGATGGTGA TGATTATCAT CGCAGTAGGT 
TCTTTCTATG CGATTCCAAA TCTCTTCGGG GAAGACTACG CTGTACAGGT TGTCGCTACC 
CGTGGTGCTG AGGTTACTGC AACGACTCAG TCGACCGTAA ACGATATTCT TGCAAGCAAA 
AATATCGAGG TAAAACGTTC TGAACTTGAA AATGGACAAT TGCTTGTTCG TGTCAATAAC 
GGCGAGCAAC AACTGTTAGC AAAAGAAGCG ATTATCGAGT CTCTAGGTGA TAAATACATC 
GTCGCCTTAA ACTTAGCTCC AAAGACGCCA CAGTGGCTAG AATCAATGGG CGGAAGTCCA 
ATGAAGTTAG GTCTGGATCT ACGTGGTGGT GTGCACTTCT TAATGGAAGT GGATATGGGC 
GAAGCGATCC GTAAGATGAC TGAAGCCAAG ATGTCAGATT TTAGAACCGA TCTTCGTGGT 
GAAAAAATCC GATATGCAGG TATTCGAAAT AGCGCTAAAG GTATCGAGAT TAAGTTCCGT 
GATGAGGAAA ACTTAGGCAG AGCTGAACGT TTTCTAAAGA CTCGCGGTAA TGACATGGTC 
TTTAGAGATA TCTCATCTGG CGGTAATTAC CTGTTACTGG CAAATCTTAG CGAAGCTTAT 
GTTAAGCAAG TGAAAGAGGA AGCACTGCAG CAAAACATCA CCACGATCCG TAATCGTGTG 
AATGAGCTAG GTGTAGCCGA GCCTGTTGTA CAGCGTCAAG GTGCTGAGCG TATTATCGTT 
GAACTTCCAG GTGTTCAAGA CACGGCTCGT GCTAAAGATA TCTTAGGTGC AACTGCGTCA 
ATTGAGTTCC ACATGGTTGA CGAGAAAGCC GATGCAGCTG CCGCTGCAAG TGGCCGCATC 
TCACCAAGTT CGCAGGTGTA TAACCGCCGT AATGGTGGCC AAGTTGTGCT GCATAAAGCG 
GTTATGTTGA CCGGTGATCA TATTCAGGGC GCACAGCCAA GTTTCGATGA ATACAGCCGT 
CCTCAGGTAA GTATTAACTT AGATTCTAAA GGCGGTTCTA TCTTCTCAAA TGTGACTAAG 
GACAACATTG GTAAACCAAT GGCGACCCTG TTTATTGAGT ATAAAGATAA CGGCGAAAAG 
AATCCTGACG GCAGCATCAA GATGCAGAAG ATTGAAGAGG TGATCTCAGT TGCCACTATT 
CAAGCACGTC TTGGTCGTAA CTTTGTTATC ACAGGTCTTG AGCATGCAGA AGCGCAAAGC 
TTAGCTCTAC TACTTCGTGC TGGTGCCTTG ATTGCGCCTG TGACAATCGT AGAAGAGCGC 
ACCATTGGCC CAAGCCTAGG TGCTGAAAAT ATTCAAAACG GTATGCAAGC GATGATCTGG 
GGCATGGCCG TAGTACTCAT CTTTATGTTG GTGTACTACC GTGGTTTTGG TCTTATTGCG 
AACTTAGCTC TAACGGCTAA CTTGGTGATG GTTGTTGGCG TTATGTCGAT GATCCCAGGT 
GCCGTGCTGA CCCTACCAGG TATTGCGGGT ATGGTGCTAA CCGTGGGTAT GGCTGTAGAT 
GGTAACGTTC TAATTTATGA GCGTATCCGT GAAGAGCTAC GTAACGGCCG CAGTGTGCAA 
CAAGCGATCC ATGAAGGTTA TGGCAACGCG TTTTCAACCA TCGCCGATGC GAACATCACC 
ACCTTTATGA CGGCATTGAT TCTGTTTGCC GTGGGTACTG GTGCTGTTAA AGGTTTTGCT 
GTCACCTTGA TGATTGGTAT TGCGACGTCA ATGTTCACTT CTATCGTGGG TACTCGCTCA 
ATAGTTAACG CTATTTGGGG TGGTAAACGC GTTAAGAAAC TATCTATATA A 

 

Protein sequence

MLNKYPMWKN LMVMIIIAVG SFYAIPNLFG EDYAVQVVAT RGAEVTATTQ STVNDILASK 
NIEVKRSELE NGQLLVRVNN GEQQLLAKEA IIESLGDKYI VALNLAPKTP QWLESMGGSP 
MKLGLDLRGG VHFLMEVDMG EAIRKMTEAK MSDFRTDLRG EKIRYAGIRN SAKGIEIKFR 
DEENLGRAER FLKTRGNDMV FRDISSGGNY LLLANLSEAY VKQVKEEALQ QNITTIRNRV 
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKDILGATAS IEFHMVDEKA DAAAAASGRI 
SPSSQVYNRR NGGQVVLHKA VMLTGDHIQG AQPSFDEYSR PQVSINLDSK GGSIFSNVTK 
DNIGKPMATL FIEYKDNGEK NPDGSIKMQK IEEVISVATI QARLGRNFVI TGLEHAEAQS 
LALLLRAGAL IAPVTIVEER TIGPSLGAEN IQNGMQAMIW GMAVVLIFML VYYRGFGLIA 
NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRNGRSVQ 
QAIHEGYGNA FSTIADANIT TFMTALILFA VGTGAVKGFA VTLMIGIATS MFTSIVGTRS 
IVNAIWGGKR VKKLSI