| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1580 |
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| Symbol | |
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| ID | 6115820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1970724 |
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| End bp | 1971782 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641633062 |
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| Product | nucleotidyl transferase |
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| Protein accession | YP_001759961 |
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| Protein GI | 170725935 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
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| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.995766 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCAA TATTGAGTAA AGTAACAATA TCCCCAGATA AGACGCTCCG CGATGCTTTA
GAGCTCATCA ACTCTCAAGC GCTACAGGTA GCGTTAGTCA TAGATCATAA TCAACACCTT
TTAGGCGTGA TCACTGATGG TGATATTCGT CGTGGTTTAC TCAATAATTT ATCACTCGAT
GCTATCGTCA CCCAAGTGAT GAATACGAAC CCTAGAACAG CAGCTCCTTC GACATCGAAG
AAAAAACTGC TTCAACTTAT GCAGCAACAC AGCATTTTAT CAATCCCATT AGTCAAAGAT
AATATCCTCG TGGGATTAGA GACCTTAAAG AGTGCACAAC AGCAGACTCA TTATGCCAAT
CCGGTACTGA TAATGGCAGG CGGTTTTGGT ACGCGCCTAA AACCTCTTAC AGATAGATGC
CCTAAACCTA TGTTAAAAGT AGGAGACAAA CCCCTACTTG AGATAGCCCT GTTCAATTTT
ATTCAAGCAG GCTTCACCAA TTTCTATATT TCAACTCATT ACATGCCTGA ACAAATCCAA
CAGCATTTTG GCGATGGTAG TCAGTGGAAC ATCAACATCA CTTATGTTCA TGAAGATACG
CCATTAGGAA CAGGGGGAGC CGTTGGCCTA TTGCCTAAGA GTATTCCTCA GTTACCCACT
ATTGTTATGA ATGGTGACAT TCTAACCAAA GTGGATTTTC AACTGCTGCT CAAGTTTCAT
GATGACAATA ACGCTGACGC CACTATGTGT GTCAGAGAGT ATGACTATCA AATACCTTAC
GGTGTGATAA GTGGTACCGG AAGTCGCATT ACAGGTATGA TCGAAAAACC GATACAACGC
TTTTTTGTGA ATGCTGGTAT TTATGTCATT AATCAAGAGA TCATAAAGAG TGTTGCAGCT
AATACATATA TCGATATGCC GACGCTGCTA GAGCAAAAAA TTGCTGATGA GGGGCATGTT
CTTATGTTCC CAATCCATGA ATATTGGCTC GACATTGGCC AAATGGATGA CTTCAAACAA
GCTCAGGCAG ATATCTGCGC AATTGGTTTT GAACAATGA
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| Protein sequence | MSPILSKVTI SPDKTLRDAL ELINSQALQV ALVIDHNQHL LGVITDGDIR RGLLNNLSLD
AIVTQVMNTN PRTAAPSTSK KKLLQLMQQH SILSIPLVKD NILVGLETLK SAQQQTHYAN
PVLIMAGGFG TRLKPLTDRC PKPMLKVGDK PLLEIALFNF IQAGFTNFYI STHYMPEQIQ
QHFGDGSQWN INITYVHEDT PLGTGGAVGL LPKSIPQLPT IVMNGDILTK VDFQLLLKFH
DDNNADATMC VREYDYQIPY GVISGTGSRI TGMIEKPIQR FFVNAGIYVI NQEIIKSVAA
NTYIDMPTLL EQKIADEGHV LMFPIHEYWL DIGQMDDFKQ AQADICAIGF EQ
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