Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1434 |
Symbol | |
ID | 6115674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 1812995 |
End bp | 1815256 |
Gene Length | 2262 bp |
Protein Length | 753 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641632922 |
Product | TonB-dependent receptor |
Protein accession | YP_001759821 |
Protein GI | 170725795 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000294975 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTCC AACTTAAGCT AACTTACCTT GCCATATTAG CTAGCCTTAG TAGCTATGCT CACACCAGTG TTGCTGCCGA TAACAGCGAA ACTGAGGCTC AGGGGAACAT AGAACAAATT GTTGTAACTG GGTCATTCAG TGGTAAAGCC ATTAGAAAAG ATGAAGCCAG TTTTGCTATC AGCTCTTTCA CCGATGAAGA TATTCAAAAG ATGTCCCCAA AAAGCACCGC TGACCTTTTT AAAGCGGTAC CAGGTGTATG GGCAGAAAGC TCAGGTGGAG TATCTGGGGC TAATGTTTTT GTCCGAGGTT TCCCTGGTGG CGGTGATGCT CCTTTTCTTA CGGTCCAACT CCAAGGTGCA CCTATTTTTC CCCCTTCAAC ACTCTCGTTT CTTGAAAACT CAACCCTATT TCGCCTCGAT GAAACCGTGG AGTTTATGGA AGCCCTTAGA GGGGGGCCTA ACCCCGTTAT CTCCAATGGC CAGCCCGGTC TCACCACTAA CTTTCTGCTA AAGGAGGGAA GTGATGATAC CGAAGGCTTA ATCAAATACT CCACTTCAGA CTACGGACTG CAGCGGATCG ACGGTGTGTT AAGTGGAAGT CTTGCTGAAG ATCTTTACTT CATGGTAGGC GGATATTTTA AAAGCTCACC AGGTGTTCGG GATGCTGGTT TCGATGCTGA AGAGGGTCAG CAATTTACTA TCAATCTAAC CAAAGAACTC GATAACGGTA AGATAAACCT CTATACCCGA ATCACAGATG ATCATGGTGT CTGGTACCTA CCTGCACCGC TGAATGTCGA CACTGTTGAT AATGAATATG TTCAGATAGG AACCAATAAC CGCCAAGCCA CTGTTCAATA CGGACCTAAC AGTACAAGTG AAGCCTTTGA CTTTGGCGAT GGTAGAGGCT GGAACGGATC TGTCACAGGC GGAAGCATAG ATCTAAGTTT TGATAACGGC TGGGATCTCG TCGACCGATT TATCTATACC AAAGGGGATG CCGATACCTA TGGTTTAGTT CCTAATGGAG ACCCAACACA ACTATCTAAC GTCGCTGACA GCGGCAGTAC TGCGACTGGT GCAGTCACAG GCACGGAATA TGCGGGCTCC ACTATGGTGC AACAGATTGG CCGCTGGGTT GTTAAGAAGC AGATTGAGTC CTTTACCAAT GACTTTATCT TAACCAAAAC CTTTGAAGAT GTTTCAGTCA CAGCAGGCTA TTACAACTCA ACCTTCAAGG CGAAGGACTG GTGGGCACTG GGTAATCAAG CTTACCACGT GGTTGAATCT GGCGGTGAGA TGCTAACAGG TATCGACTGT AATGATAATC AGGACAGTTG CGGCTGGAAC TATGATATCA ACAGCATAGG TGAAGGTACC ACCCAAGCGC TTTATACCGC TATCTCCTAC GAAATCTCTG ACGATTTAAC CATAGATGCA GGCCTTAGAG GGGAGAATCA TCAGATAGAG TACACAGTTG ATGAAGGCTT AGATGGTAAA ATCACTAAAG CCGTCTCCTA TGATGAATCC AGCACAGCTT GGACCGTGGG AGCAAACTGG ATGTTTGCCG ATCAGATGGG CGTATTTGCT CGCATCAACG ATGGTAGTAA GATGCCCTAT TTTGACGACT TCAGAGATAA TTTTGGCGCT TATGAAAGTG GTGAAGATCT GATCAAAGAG GTCAGCCAAT ATGAGCTAGG TTATAAATTA GTAGATGACG ACTTCGAGCT CTTCGCCACC CTATTTATGA ATGAAGTGAA AGGCGATACC TTTGTTCGCC AACCCGGCGC CCCGGGTGAG ATTCTCACCA ATGAAGCCTA CGGCATAGAG ATCGACTTTA ACTACTTCAA TGATAACAGT TTCTCAGTCA ATTTGAACTC GACCATTCAG GAAACTGAAA TCACAGAAAG CCCGACCAAC GAAGGTAACG AAGCCCAGAG ACAACCAGGT TGGCAGGTTC GCGTCACTCC AAGTTATGAC ATAGAGTTAG ACAACGGGAT GTACGCAACC CTATACGGCA CGATATCTGC CGTTGGTGAA CGTTATGCAA ACAATGAAAA CACAGTAACT TTGGATGGTT ATGAAAAAGT TGACCTAGGA GTACTTTTTA ACTTCACTGA CGAAGTTCAA GTGCAGTTAG CCGTTAGCAA CTTAACCGAT GAAGAGGGGT TAACAGAGGG TGATCCTAGA AGCTCTATCT CGTCAAACGG ACGCTACATC CTGCCTAGAT CCATTGATTT AAGTCTGAGT TATGCATTCT AA
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Protein sequence | MKFQLKLTYL AILASLSSYA HTSVAADNSE TEAQGNIEQI VVTGSFSGKA IRKDEASFAI SSFTDEDIQK MSPKSTADLF KAVPGVWAES SGGVSGANVF VRGFPGGGDA PFLTVQLQGA PIFPPSTLSF LENSTLFRLD ETVEFMEALR GGPNPVISNG QPGLTTNFLL KEGSDDTEGL IKYSTSDYGL QRIDGVLSGS LAEDLYFMVG GYFKSSPGVR DAGFDAEEGQ QFTINLTKEL DNGKINLYTR ITDDHGVWYL PAPLNVDTVD NEYVQIGTNN RQATVQYGPN STSEAFDFGD GRGWNGSVTG GSIDLSFDNG WDLVDRFIYT KGDADTYGLV PNGDPTQLSN VADSGSTATG AVTGTEYAGS TMVQQIGRWV VKKQIESFTN DFILTKTFED VSVTAGYYNS TFKAKDWWAL GNQAYHVVES GGEMLTGIDC NDNQDSCGWN YDINSIGEGT TQALYTAISY EISDDLTIDA GLRGENHQIE YTVDEGLDGK ITKAVSYDES STAWTVGANW MFADQMGVFA RINDGSKMPY FDDFRDNFGA YESGEDLIKE VSQYELGYKL VDDDFELFAT LFMNEVKGDT FVRQPGAPGE ILTNEAYGIE IDFNYFNDNS FSVNLNSTIQ ETEITESPTN EGNEAQRQPG WQVRVTPSYD IELDNGMYAT LYGTISAVGE RYANNENTVT LDGYEKVDLG VLFNFTDEVQ VQLAVSNLTD EEGLTEGDPR SSISSNGRYI LPRSIDLSLS YAF
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