Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1356 |
Symbol | |
ID | 6115596 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1705934 |
End bp | 1707097 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641632844 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001759743 |
Protein GI | 170725717 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00018874 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCTGCTC AAACCGTTTC AAAATTAAAA TGGTGCACTC TGTTTATTAT AGGATTGCAA TTAGCGGCCT GTGGCGACGC TCCTGCACCT AAGCAAGCTA TGTTGCCGAG TGTTATCGTC AATACGGCTA AAACCGAAGA GATTCAATCT AAGACTGAAA TCGTCGGTCG TACTCATGCT TCTGAAGATG TGGTAATTAA ATCTCAAATT CAGGGGCAGT TGCTAAAGCG CACTTTTATT GAGGGGGATG ATATTGATAA AGGGGATCTG TTGTTTGAGA TCGACCCCTC TACTTTTGAG GCTGAACTTG CTCAACATAA AGCTGTGTTA AAGCAAGCAT TAGCTTCCCG TGATGTGGCG GTAATGAACT GGGAGCGCGG AAGCCGTTTG TTGCCGGACG GCATGATTAG TGCTCAGGAT ATGGATGAGC TGACCACCCG TAAGCTGACA ACGGCGGCAG GTGTGGTTCA AGCTGAAGCT GCAGTTAAGG GCTCAGAGCT TCAATTAAGT TACACCAAAA TTTATGCTCC CATCTCAGGT CGTATTAGTA ACTCAAAGGT CAGCACTGGT GACATTATCA GCTCTAACTC TGAAATGGCT AACTTGGTTC AGTTGCAGCC TATGTGGGTT AATTTTCAAG TAGCTGAAAG AGCATTGATC AATGCTCGTG AGAGCTTTGC TAAGGCGGCG AAGAAAGAGA TCGAGATCTC AGACATCATC ATAGGGTTAC GCCTGCCAAA TGGCAGTATG TTTTCAGAAA CAGGCTATGT GGACTTTGTG AGTAACCGTG TCGATGCCGC AACAGGTACT CTACCTATTC GTGCGACCTT CAAGAATGAA AACAAGCTGA TGTTACCAGG CATGTTTGTC ACCTTAATCA TAGAGTCACC AGTGAAAGAG AATGCACTGC TTATTCCTCA AGCATCGGTA CAGGAAGATC AACAAGGTCG CTTTGTGATG GTGCTTAACG ATAAAGATGA GGTTGAGAAA CGTATTGTTG AGTTAGGTGA GCGCTTCGGC ATCGATTGGC GTGTCTTGAG TGGCCTTAAA GATGGTGAAC GGATTGTGGT TGATGGACTA CAGAAAATTC GCCCTGGTAT TCAGGTAAAA GCAGTTGAGC AGGAAGTAAT TCCGTTTAAA GAGTCTCAAA CGGCACCTAA ATAG
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Protein sequence | MPAQTVSKLK WCTLFIIGLQ LAACGDAPAP KQAMLPSVIV NTAKTEEIQS KTEIVGRTHA SEDVVIKSQI QGQLLKRTFI EGDDIDKGDL LFEIDPSTFE AELAQHKAVL KQALASRDVA VMNWERGSRL LPDGMISAQD MDELTTRKLT TAAGVVQAEA AVKGSELQLS YTKIYAPISG RISNSKVSTG DIISSNSEMA NLVQLQPMWV NFQVAERALI NARESFAKAA KKEIEISDII IGLRLPNGSM FSETGYVDFV SNRVDAATGT LPIRATFKNE NKLMLPGMFV TLIIESPVKE NALLIPQASV QEDQQGRFVM VLNDKDEVEK RIVELGERFG IDWRVLSGLK DGERIVVDGL QKIRPGIQVK AVEQEVIPFK ESQTAPK
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