| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1348 |
|---|
| Symbol | |
|---|
| ID | 6115588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1697240 |
|---|
| End bp | 1698016 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641632836 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001759735 |
|---|
| Protein GI | 170725709 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00722512 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000397841 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACT CTTTACTTAG CACTGCCCTG TTATTTACCG TAAGCCTGAA CTGTTTTGCC
CATTCAGAGG GTATAGAAGA GGCTGTAAGT AAGAAAAAAG TAAGCAGATT TCAGTGTGAT
CAATTAGCGC CCACTAACAT CAAGCTCGAG TATGATGTGA TCGAATCAGA CCGTTTTGGT
ACACCACAGG CTAGCTATTT GATGCGTTTA ATTAAAAACC AGCATCAAGT TATCTACCAA
ACGTCACCAC AAACATTCGA AGCTTGGGAT AAAAATGGTG AATATATCCG TTATTTTCCC
GAGGAGCGTC GCTCAATCAC CTACCGTCCA AGCGATCTAC GCTCGCTAAA TATCAGTTAT
GATCTGTTAC AGCAGTTTCA CTTGGTCTCA CCTGAATTAA AATCACAGTT ACAAAGGGGT
GAGAACACAC AGGCATCCTG CTTCCGGCTA GAGCAATATT CAGGTCTGCA AGGCGAGCAA
AACATTAAAC TCAAGTGGAT TGAGTCTCTT GCTCTCCCCT ATCAATTCTC CATCACCCAT
GCTCGAGGAA GCGTGCATTA TCAACTGCGT GATGCCAGCC CCATGACAAG CGAGAAGGTC
AACACCATCA CACAAGGTTA TAACGATCTC GACTTTGCCG ATGTGGGCGA CAGTGAGTCC
GATCCCTTTA TCGCTAAGAT GATCACCCAA GGTTTTATTC AGCACGGCAG TTCAGGGTTT
TATGACACTG ATGGCAACTC TCTGTCAGGT GGAGATCACC ACGGCCATGC GCACTAA
|
|---|
| Protein sequence | MKYSLLSTAL LFTVSLNCFA HSEGIEEAVS KKKVSRFQCD QLAPTNIKLE YDVIESDRFG
TPQASYLMRL IKNQHQVIYQ TSPQTFEAWD KNGEYIRYFP EERRSITYRP SDLRSLNISY
DLLQQFHLVS PELKSQLQRG ENTQASCFRL EQYSGLQGEQ NIKLKWIESL ALPYQFSITH
ARGSVHYQLR DASPMTSEKV NTITQGYNDL DFADVGDSES DPFIAKMITQ GFIQHGSSGF
YDTDGNSLSG GDHHGHAH
|
|---|
| |