| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1331 |
|---|
| Symbol | |
|---|
| ID | 6115571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1683449 |
|---|
| End bp | 1684267 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641632819 |
|---|
| Product | pyrroline-5-carboxylate reductase |
|---|
| Protein accession | YP_001759718 |
|---|
| Protein GI | 170725692 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
|---|
| TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00987807 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAGA AAAAGTTGTG CTTTATCGGT GCTGGCAATA TGACACGCAG CATTGCAAGT
GGTTTAGTTA AAAGTGGCTA TACATCATCA TTGATCCATG CAACCAATCC CAGCGTTGAG
AAATTAGATG CACTGAAACG CGATCTTAAT ATTAAGGTCT CCCATGATAA TCTAACGGCT
GCTAAAGATG CCGATGTGAT TATTTTAAGT GTTAAGCCCC ACTTTATGCA GGCTGTATGT
GAAGAGCTTA GCGTTCTCGA TTTAAGTCAA AAGCTTATCA TCACAATTGC AGCAGGGATA
ACGGCTAACA GATATAAAGA TTACTTTGCT CAAGAGATAA CACTTATCCG CACTATGCCT
AATACACCGA CCCAGATAGG AGTTGGAATG ACTGGCTTAT TTGCCGACGG GGATATCTCC
CAAGAACAGA AACTTATCTG TGAGCAGTTA ATGAAGAGCG GTGGCGAAGT TCTTTGGGTA
GAAACAGAGG AGGAGCTCAA TCAGGTTATC GCTCTGGCAG GCAGTTCTCC GGCTTATTTT
TTCCTATTTA TGGAGTCGAT GTTAGCGGCA GCTAAAGATT CAGGTTTAGA CGAGACGAAA
GCACGCTTAC TGGTTCAACA GGCCGCTTTA GGCGCAGCAC AGATGGTGAT CCAAAACCCA
GAACTGACTA CCGCGCAATT AAGAGAAAAT GTCACCTCTA AGGGAGGCAC AACAGCTCAA
GCCATAAATG CCTTTGAATC TGGTAATATT AGAGGACTCG TTAAGCAAGC CATGGATGAC
TGTGTCGCTC GTGCCCAAGA GATGGCCAAA CAGTATTAA
|
|---|
| Protein sequence | MLEKKLCFIG AGNMTRSIAS GLVKSGYTSS LIHATNPSVE KLDALKRDLN IKVSHDNLTA
AKDADVIILS VKPHFMQAVC EELSVLDLSQ KLIITIAAGI TANRYKDYFA QEITLIRTMP
NTPTQIGVGM TGLFADGDIS QEQKLICEQL MKSGGEVLWV ETEEELNQVI ALAGSSPAYF
FLFMESMLAA AKDSGLDETK ARLLVQQAAL GAAQMVIQNP ELTTAQLREN VTSKGGTTAQ
AINAFESGNI RGLVKQAMDD CVARAQEMAK QY
|
|---|
| |