Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1301 |
Symbol | |
ID | 6115536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 1647590 |
End bp | 1648123 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641632784 |
Product | type IV pilus biogenesis protein, putative |
Protein accession | YP_001759688 |
Protein GI | 170725662 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4970] Tfp pilus assembly protein FimT |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.397112 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAACAC TAGAAAAGGG TTTCACCTTA GTAGAGCTTA TGGTGACACT TGTCATTGGT ATGATATTGA TCACTGTTGG TGTTCCCTCT TTCACAGAGA TGTACCAAGG ATATAGAGCT GAGAGTGAAA TTAGAAAAGT ACAACAATAC CTAATGTTTG CCAGAAGCCA AGCAGTCAGC TATGGTGCCA GAGTCACTGT ATGTCCCATT TCAGGCACTA GTTGTGGCTC TGATTGGAAG TCAGGTTTCA GCATCTTTAT TGATAATGGC GCAGCGGCAA CTATAGATTC AACAAATGGC GTAACAGATC CCATCATCAA ACAGGTAGAT GCATTTAACA GCAAAGACTT TTTTACCTAT GCAGGAAGCT CTGTGAGCTT TACACCGGAT GGGCTTATTC CAACCAATTC AACAGTCGGT ACTTTTTCAT ACTGCCCGGG CTCTACAACC AGCGAAAACT CACGTGGTGT AGAGGTCAGT TCCTCAGGAA AGGTTCGCTT TTCTGACTCT ATTATCAATT GTACTTCTTA TTAA
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Protein sequence | MLTLEKGFTL VELMVTLVIG MILITVGVPS FTEMYQGYRA ESEIRKVQQY LMFARSQAVS YGARVTVCPI SGTSCGSDWK SGFSIFIDNG AAATIDSTNG VTDPIIKQVD AFNSKDFFTY AGSSVSFTPD GLIPTNSTVG TFSYCPGSTT SENSRGVEVS SSGKVRFSDS IINCTSY
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