| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1298 |
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| Symbol | |
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| ID | 6115533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1643327 |
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| End bp | 1646887 |
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| Gene Length | 3561 bp |
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| Protein Length | 1186 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641632781 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_001759685 |
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| Protein GI | 170725659 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.991628 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGTTA AACATGTTGC ATGCGTAGCT TTATTTGTTT TAGTTGGTAT ATCGGCAGGA
ACCTTTGCTG ATGATACTGA TCTCTATGTT GTAGAGTCTT CTGTAAGAAC GGGAGCGAAC
CCTAAAGTAT TGATAATTTT TGATAACTCA GGAAGCATGA CTACCATTGA GGAGGATGCA
CCTGGCGCTT ATGATTCCAC CACCACCTAT GAACCCATTA GCTCAGCCCA CGCGTATCAA
GATGATAAGA TCTACTTCAC AAAAGGGATA GGTATCGATA ATGCTGGTAT GGACATTCCC
TTAAGCCCCT CTGATTCAAG ACGCTTTTTA AAAGATATCA ATGGCTGTCA TCAAAGCTGG
GATCTTATTG AGCGGTATGG GCGTTTCACT GGCTTTGTTG GTGAGTATAG AATAAAGGGG
AAAACGGGCT CTTGGGGGGA GTTACGAGAT AACAGTGGGG CTAACTATGA CACCATAGAT
TGCCTTGAGG ATATTCAGGA AAATGATCCT ATCAATGCCA AAGACAAAGA TGGTAATGCC
CATGGTGACG GTTTTCCTGT CGATGGAATG AGACAGGGTA ATACCCCTAA GCCCTATAGC
ACAACAGGCG GAGATACTCA GCTTGGGTTA GGTGAAGCAG TTACTCTCTA TACGGCCAAT
TATCTTCGCT GGCATGCGGC TGCTGTTGCT GACGCGTTAC CAACTAGCCC ACAATCTCGT
TTAGACATTG CGAAAACGGC AATTGAGACA GTGATTAACA CGAATACCTC GATAGATTTT
GGGTTAGCTC TGTTTAATAT GAACTATCCA TCAGAGGGCT ACCGAGATGG CGGGAGAATC
GTGTCTAAGA TACAGAAGAT GTCTCCGGCA AATAAAACTG CGCTTTTATC TACCATAGAT
GGGATCCCAG CAGATACAAA CACCCCTCTT TGTGAAACTT TATTTGAAGC TTATAAGTAC
TTTTCGGGTA AGCCAGTGCT TTATGGTAAA AAGGATTCTG ATTACTCAAG TTGGTATGAT
GGTAATAAAC CTCCTAGAGA TACTAGCGCA GAGTCTGGTC TGAACTACTC CTCGCCATTT
AGAGTTTGCC CTGATATAGC CTACGTTATC TATATTACTG ATGGTGTGCC AACTCAAGAC
ACCTTCGCTG ATACAGATAT AACAACACTC ACAGCTAGTG GAGTAACAGA GAAGGCTGAT
GATAAAGTGG TTGCTCCAGA TTATTCTGTT TTCTCTGATC CAGGCTTAAG CTCTCCAAGT
TATCTCCCAG CGTTAGCAAG TTATCTTTAT CATAACGATC TAGTCACTTC ACCAGAGACT
TTGAGTGATG GCTCTACAAG AGAGCATATG CAAACAGTTA AAACCTTTAC TATCGGTTTT
AGCTCTGGTG CTGAGGATGC CGAAGCGCTA TTGAAAGAAA CTGCGAGGAG AGGCGGGAAC
AAAGTCGATG ATAATGGTGT TAATACCGGT TATTTCCAAG CTACGGGAGG CTTAGGACTC
GTTGCCGCCA TGAATGATGC ACTCCTATCT ATTATGGAGA CTGATGCCAG TTTTACCTCT
CCTAGTATCG CAAGTAATAA CTTTGATAGA ACTCAAACTT TTGATGCGGC CTATTATGCG
ATGTTTCTAC CAGGGAGAGG CCCTAGATGG AGTGGTAACC TTAAAAAGCT TAAAGTGACT
TCAGGTGGTG TTCTGGTGGA TAAGTCTGGT GGTGTTGCTA TCGGTGATGC TGGAGATATT
AAAGACACCG CATGTACTTT CTGGAGCTTA TGCACAAGTA AGTCTGATGG CAAAAGTGTT
CTAGAGGGGG GAGTAATAGA AGCCCTACAG AGAGCAACAC CCTCTACCGG GATAAGTGCT
CGTACTATCT ACTCAAATTT GACTAACCCT ATGTCGGATC TTGCTCAAGT TTCAGAATCC
ATTCTCTCAA CCAGTATGGG GATAGTTGAA GCCGATGTCA GTGATACGGT TAAGTGGTTA
TATGGTTATG ATGTTGATGG TGATAACCCA GGTGGAAGTG CAACTGATTA TCGCAGTGAT
ATTATGGGAG ATCCTCTGCA CTCAAAGCCA TTAGCGCTGA ACTTTGGCAC AAAGACGAGC
CCTGATATCC GTATTGTTTT AGGAACTAAT CAAGGCTTAG TTCATATGTT TAAAGATACA
GGAGATGAAG TTGAAGAGAG TTGGGCTTTT ATCCCTACAG AACTCTTAAG CAATGTTCCT
GTGTTGAAAC AAAATGTGGC TAATGGTGGC CATTATATTT ACGGCATGGA TGGTTCCCCT
GTTTCTTACA CTGAGACTGA CTCGTCAGGG AGAGTGAATA AAGCTTGGGT GTTTATGGGG
ATGCGCCGTG GTGGTTCCTC CTATTATGCA CTAGATGTCA CCTCTCCAGA TTCGCCTAGT
GTTAAATGGA TTATAACTCC TGATAGTTCA GGTTTTGCTG AGCTTGGGCA GTCTTGGTCT
GAACCTATTG TGACGACTAT TCCGGGGCAT TCTGGTCCTG TTCTGATATT TGGTGGCGGT
TATGATGCTC CGCTTTATGA TGCTGATACT GTTCCTAGTA CTGCTGCGAG TAAAGGCAAA
GCTATCTATA TAGTTGATGC CGATACAGGT GCCTTAGTGC ATGCATTTAC AGATACTGGA
GTTGGCGGGA CTAAAATGGA TGGACTTGTT GACAGTATTC CAAACTCTGT TGCGATTTTG
GACAGCAACA ATGATGGTGA CACCGATAGA ATCTATGCCA CGGATGTAGG TGGTCATGTA
TGGAGGATTG ATCTAGCAGA GTCAACAAGG AGTACATGGA GCTCTTATAA GTTTGCAGAT
CTAGGTGGAA GTACAGCCAT TAATGATAGG CGTTTTTTTG CGGAGCCTGC TGTGGCTCAA
ACGACTTTCA GTAACATCTC CGAAGTTGAA GTGACTGATG GAGAGGGCGC GACAACGACA
ACTACCTCAT ATCAAAATGT TCCCTATGAT GCCGTTGTTA TTGGTAGTGG CAGTCGTCCC
CACCCTACGA GTGTAGTGAC TTCAGACAAG TTCTTTGTAC TGCAAGATCG TAATGTCGTC
ACTCGAAGTG TGATAGGGGA GCCTGTTCCA GAAGTGCTAG ATATGAGTAA ACTCTACAAT
GTTACCTCTA CACCACCAGT TACCGAGGCT GAAAATATCT CCTTTGGAAC AAAGCGGGGA
TGGTACTTTG ATTTTACGGG TTCTGGTGAA AAGTCTTTAA CTGCGGCTCT AATTATCGAT
GGCAAGGTTT TCTTTACCTC TTTCTTACCG TCAGTGAACG AGGTTTCAGA TCTAATTTGT
AGTAGCTCTG GTCAAGGTCG ATTATATGTG TTTGATCTTC ATAGAGGGAC GCGAAGTTAT
GAGAATGTCT ATTATGAGTT AGGAGAGCGT GTACCAGATA CCCCTCAAAT AGTGGTCCCA
GCTCCAGAAA CAGGTGAAGA CCCCTATATC TATATTATTG GTGTAGGGAA AGGAGAGATT
AAAGATGGAG CGCCAACAGG AACCATTAAT GTAGGGGCGG GTTTAGGCGT TAATAAGATC
TATTATCATA TCGATGAGTA G
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| Protein sequence | MIVKHVACVA LFVLVGISAG TFADDTDLYV VESSVRTGAN PKVLIIFDNS GSMTTIEEDA
PGAYDSTTTY EPISSAHAYQ DDKIYFTKGI GIDNAGMDIP LSPSDSRRFL KDINGCHQSW
DLIERYGRFT GFVGEYRIKG KTGSWGELRD NSGANYDTID CLEDIQENDP INAKDKDGNA
HGDGFPVDGM RQGNTPKPYS TTGGDTQLGL GEAVTLYTAN YLRWHAAAVA DALPTSPQSR
LDIAKTAIET VINTNTSIDF GLALFNMNYP SEGYRDGGRI VSKIQKMSPA NKTALLSTID
GIPADTNTPL CETLFEAYKY FSGKPVLYGK KDSDYSSWYD GNKPPRDTSA ESGLNYSSPF
RVCPDIAYVI YITDGVPTQD TFADTDITTL TASGVTEKAD DKVVAPDYSV FSDPGLSSPS
YLPALASYLY HNDLVTSPET LSDGSTREHM QTVKTFTIGF SSGAEDAEAL LKETARRGGN
KVDDNGVNTG YFQATGGLGL VAAMNDALLS IMETDASFTS PSIASNNFDR TQTFDAAYYA
MFLPGRGPRW SGNLKKLKVT SGGVLVDKSG GVAIGDAGDI KDTACTFWSL CTSKSDGKSV
LEGGVIEALQ RATPSTGISA RTIYSNLTNP MSDLAQVSES ILSTSMGIVE ADVSDTVKWL
YGYDVDGDNP GGSATDYRSD IMGDPLHSKP LALNFGTKTS PDIRIVLGTN QGLVHMFKDT
GDEVEESWAF IPTELLSNVP VLKQNVANGG HYIYGMDGSP VSYTETDSSG RVNKAWVFMG
MRRGGSSYYA LDVTSPDSPS VKWIITPDSS GFAELGQSWS EPIVTTIPGH SGPVLIFGGG
YDAPLYDADT VPSTAASKGK AIYIVDADTG ALVHAFTDTG VGGTKMDGLV DSIPNSVAIL
DSNNDGDTDR IYATDVGGHV WRIDLAESTR STWSSYKFAD LGGSTAINDR RFFAEPAVAQ
TTFSNISEVE VTDGEGATTT TTSYQNVPYD AVVIGSGSRP HPTSVVTSDK FFVLQDRNVV
TRSVIGEPVP EVLDMSKLYN VTSTPPVTEA ENISFGTKRG WYFDFTGSGE KSLTAALIID
GKVFFTSFLP SVNEVSDLIC SSSGQGRLYV FDLHRGTRSY ENVYYELGER VPDTPQIVVP
APETGEDPYI YIIGVGKGEI KDGAPTGTIN VGAGLGVNKI YYHIDE
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