Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1178 |
Symbol | aspA |
ID | 6115413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1509960 |
End bp | 1511417 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641632662 |
Product | aspartate ammonia-lyase |
Protein accession | YP_001759566 |
Protein GI | 170725540 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1027] Aspartate ammonia-lyase |
TIGRFAM ID | [TIGR00839] aspartate ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000150136 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACGGTAA TGTACGCAAA CCTTAGCGAA GAAACACGTT TAGAAACGGA TCTGCTAGGG GATAAATCGA TCCCGAAAGA GGCGTTTTAC GGTATTCATA CCCTAAGAGC GATGGAAAAC TTTAATATCA GCAGTGAAAA GATTGGTGAT TGTCCTGAGT TTGTTCGCGG TATGGTGAAA ACGAAAAAAG CCGCAGCGTT AGCAAATGGA GAGCTAGGCA CCATATCTCA AGATATCGCA GCAGCAATTG TTAGAGCTTG TGACACTCTG TTAGCCGGTG AACGATTTTA TGATCAGTTT CCCATCGATG CATTTCAAGG TGGAGCGGGT ACCTCGGTTA ATATGAACAC CAATGAGGTT ATTGCCAATA TCGCTTTGAC TCAGATGGGG CACGAGAAGG GGAGTTATCA GCATATTAAC CCTAACGATC ATGTTAATAA GTCCCAAAGC ACTAATGATG CCTACCCTAC TGGGTTTCGT GTTGCGCTGT TTGAGCGAAC CGAATCTGTT TTAGCCGCTC TGACTCTCCT TATCGATACC TTTATGGCTA AGTCGGCAGA GTTTGATGAT GTATTAAAGA TGGGGCGTAC TCAGTTGCAA GATGCAGTAC CTATGACTCT TGGGCAGGAG TTTCGCGCTT TCGGTGTTAC CTTGAAGGAG GAGCTGAAAA GCATACAACG TTGTCAGGAG TTACTGCTTG AAGTCAACTT AGGGGCCACG GCGATTGGTA CTGGGCTTAA TACGCCGCAA GGCTATTCTC AATTAGCCAT CGAAAAACTG GCTGAGATCA CAGGTCACGC CTTTGTACCC GCAGAGGACT TAGTTGAAGC GACATCGGAT TGTGGCGCCT ATGTGATGTT ATCGAGCGCC TTAAAGCGTT TTGCCATCAA GCTGTCGAAG ATATGTAACG ACCTTCGTCT GTTGTCTTCG GGTCCTCGCT GTGGATTTAA TGAGATAAAC CTGCCTCAAA TGCAGGCGGG CTCATCAATT ATGCCAGCTA AAGTTAATCC GGTTATCCCT GAGGTGGTCA ATCAGGTGGC ATTTAAAGTA TGTGGTAACG ATTTGACCAT TACGATGGCG GCTGAAGCGG GTCAGTTACA ACTTAATGTA ATGGAGCCCG TTATTGGTCA GAGTTTGTTT GAGTCATTGT CGCTGCTGGA AAATGCCTGC TTTACGCTTA AAGATAAGTG CATTAAGGGG ATCACGGCAA ATCGTCAGAT CTGTCAGGAC TTCGTACTTA ACTCTATCGG TATCATCACC TATTTAAACC CATTTATTGG TCATCATGAA GGGGATATCG TCGGTAAGAT CTGTGCCGAA ACGGGCCAAA GCGTGCGAGA GGTGGTGTTA GCGCGAGGAT TGCTATCAGA GGAGCAGCTC GATGAGATCT TCTCCATTGA GAACCTGATG AATCCTCAAT ATAAAGCTCA GCGGTTTGCG ACAGCCGTTA AAGGCTAA
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Protein sequence | MTVMYANLSE ETRLETDLLG DKSIPKEAFY GIHTLRAMEN FNISSEKIGD CPEFVRGMVK TKKAAALANG ELGTISQDIA AAIVRACDTL LAGERFYDQF PIDAFQGGAG TSVNMNTNEV IANIALTQMG HEKGSYQHIN PNDHVNKSQS TNDAYPTGFR VALFERTESV LAALTLLIDT FMAKSAEFDD VLKMGRTQLQ DAVPMTLGQE FRAFGVTLKE ELKSIQRCQE LLLEVNLGAT AIGTGLNTPQ GYSQLAIEKL AEITGHAFVP AEDLVEATSD CGAYVMLSSA LKRFAIKLSK ICNDLRLLSS GPRCGFNEIN LPQMQAGSSI MPAKVNPVIP EVVNQVAFKV CGNDLTITMA AEAGQLQLNV MEPVIGQSLF ESLSLLENAC FTLKDKCIKG ITANRQICQD FVLNSIGIIT YLNPFIGHHE GDIVGKICAE TGQSVREVVL ARGLLSEEQL DEIFSIENLM NPQYKAQRFA TAVKG
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