| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0964 |
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| Symbol | |
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| ID | 6115198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1276457 |
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| End bp | 1277050 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641632447 |
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| Product | membrane lipoprotein lipid attachment site |
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| Protein accession | YP_001759352 |
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| Protein GI | 170725326 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
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| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0219897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACATT TCAAACTAAT TTTTCTGCTA GCAGCAGCGA TTGGCCTAGC AGGTTGCCAA
TCTAAAGTTC AGTACGGGGA TGCCACAGAA GTGGAAACCG TTAATGAAAA CTTTGGTTCA
ACCGATCTAC AAGCTATCAC ATCTAAGATG GTTGATAGTA TGCTGACCTT CCCACCAGTC
ATGGTAATAA CGGCTAACGA TCGCCCTATC GTCTTTGTCG ACAAGATTAA GAACAAGACC
TCTGAGCATA TCGATACAGA GTCTGTCACT GACTCTATCA GCAATAAACT ACTTCGTTCT
GGTAAGTTCC GCTTCATCGA CATGACTAAA GTTGATTCAG TACGTAAACA ACTGGATTAC
CAAAATAATG CCGGTATGGT TGACCCTTCT ACTGCCATCA ACTTTGGCCG TCAAATCGGC
GCACAGTACA TGCTCTACGG CAACCTTTCT AGCATAGTTA AGCAAGATGG CAGCACCACA
GATGTGTACT ACAAGATGAC CATGCGTCTG ATGGATCTTG AAACAGGTCT AATTGAATGG
TCTGATGAAA AAGAGATCCG CAAGGTAAGA TCTAAGTCTT TCCTTGGTCT ATAA
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| Protein sequence | MKHFKLIFLL AAAIGLAGCQ SKVQYGDATE VETVNENFGS TDLQAITSKM VDSMLTFPPV
MVITANDRPI VFVDKIKNKT SEHIDTESVT DSISNKLLRS GKFRFIDMTK VDSVRKQLDY
QNNAGMVDPS TAINFGRQIG AQYMLYGNLS SIVKQDGSTT DVYYKMTMRL MDLETGLIEW
SDEKEIRKVR SKSFLGL
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