| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0955 |
|---|
| Symbol | |
|---|
| ID | 6115189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1266325 |
|---|
| End bp | 1266981 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641632438 |
|---|
| Product | ribose-5-phosphate isomerase A |
|---|
| Protein accession | YP_001759343 |
|---|
| Protein GI | 170725317 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0120] Ribose 5-phosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAG ATGAGATGAA AAAAGCCGCC GGTTGGGCAG CACTAGAATA CGTTGAAAAA
GACAGTATCG TAGGTGTGGG CACCGGCTCT ACTGTTAATC ACTTTATCGA TGCCTTAGCC
ACAATGAAGG CTGAAATTGA GGGAGCAGTA TCCAGCTCTG AAGCCTCAAC CCAGAAGATG
AAAGACCTTG GGATACCTGT ATTTGATCTT AACTCTGTGG ATGAGCTTTC TGTCTATGTT
GATGGCGCCG ATGAGATCAA CGCTCATATG GATATGATAA AAGGTGGCGG AGCCGCTTTA
ACTCGTGAAA AGATCGTCGC TGCAGTCGCC GATAAGTTTA TCTGTATTGT CGATAACACT
AAGCAGGTTG ATGTTTTAGG TGAATTCCCA CTACCCGTTG AAGTTATCCC TATGGCTCGC
TCATATGTCG CTCGCCAACT AGTTAAACTC GGTGGTGATC CCGTTTATCG TGAAGGCGTT
ATCACAGATA ATGGCAACAT TATTCTGGAT GTCTACAACA TGAAGATAGT CAATCCAAAA
GAGCTTGAGC AGCAGATCAA TAAGATAGTT GGTGTTGTAA CTAACGGTCT ATTTGCAAAT
CGCGGCGCTG ATGTGCTGTT AGTGGGCTCG CCAGATGGTG TTAAAACATT AAAGTAG
|
|---|
| Protein sequence | MTQDEMKKAA GWAALEYVEK DSIVGVGTGS TVNHFIDALA TMKAEIEGAV SSSEASTQKM
KDLGIPVFDL NSVDELSVYV DGADEINAHM DMIKGGGAAL TREKIVAAVA DKFICIVDNT
KQVDVLGEFP LPVEVIPMAR SYVARQLVKL GGDPVYREGV ITDNGNIILD VYNMKIVNPK
ELEQQINKIV GVVTNGLFAN RGADVLLVGS PDGVKTLK
|
|---|
| |