| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0930 |
|---|
| Symbol | |
|---|
| ID | 6115164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1234343 |
|---|
| End bp | 1235515 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641632413 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001759318 |
|---|
| Protein GI | 170725292 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTAGAAT TTTCTGCCAC AAGTTTTAAG GTGATTAGTA TCGGTATCAA CGCAAATTTA
CCCTCATTTG AGCGGCAATT AAAAACAGAG ACTCACCTTT ATCTGATTAA AGGAGCGATG
TGGGCTACTG TTATCTCTCT GTTTATGTTG CTGGCAATCC TGCTCAATAT ATATCTGCAA
AATTCAGATA TATCGGTGTT TTACGAAGCC ATTCAAATGG TCTCCCCCCT TGTTATGATA
ACCTTCTCTG GTGCCTTAGC CGCTTATTTC GTCAAGAGAG AGAATATCGC TATTTGGGGC
TTGTACAGTT ATCTTTTTCT ATTGGAGATA GTCTGGGTAT ACCTTGTTTG GCGCCTATTT
CACTTTTCTA GTGATAAACT CCCATCCTAT GCTGCACTGG CTGGTGTCGA GTCAATCATT
GATATTTTGG TGTTAACCAT TGCGATAGCA TTTTTCCCAA ATAGAAACTT AATGCTGATG
GGAGTTCTGC CCTTAATGGT GTTTAGTTGC TACGAAAGAG TCTTGGTGGT GCCTGACCAA
TATCTGTTTC CGCTCACTAA GTTTTTCTGC TTCTTAGCGA TTATAGTCTC TGGGCAGAAA
GTGCTTTCAT CATGGTTTAA TAAAGCGATT CTGCGCAATG TTGAAAAACA GTACCTCTTA
GCTCAATTTA GGCGTTTGGC ATTAGTTGAT AGCCTAACCG ATATCAGTAA TCGTCGACAC
TTCGATGAAA TTCTTCTGCA GGAGATCCGT GCATCAGAGC GTACTGGTCA CCCCTTAGGT
TTGGTGTTAA TTGATGTGGA TTACTTTAAA CGTCTCAATG ACAGTGCTGG ACATCAAAGT
GGGGATGAGT GCTTAGTTGA AATTGCAAAA ATTTTAACTG TTACTGCAAA TCGTCCTCGA
GATTTAGCAG CCAGATACGG TGGTGAAGAG TTTGTCCTAT TGCTTCCTGA AACTGATATA
GCAGGTTGTA TTGAAATTGC AGAGGCATTA AAGAGAAAGC TGGCCGTCGC TAAATTGCCA
CATCCCGATT CCGATATTGG GTCTTTGGTT ACTATCTCCC AAGGTGTGAC GCTTTGGAAA
GAGGGAATGG AGGCGCAGGA GTTATTAGAG TGTGCTGATA GCTTGCTATA TCAAGCTAAA
TCGAGCGGAA GGGATAGGTT TATCGCTGCT TAA
|
|---|
| Protein sequence | MLEFSATSFK VISIGINANL PSFERQLKTE THLYLIKGAM WATVISLFML LAILLNIYLQ
NSDISVFYEA IQMVSPLVMI TFSGALAAYF VKRENIAIWG LYSYLFLLEI VWVYLVWRLF
HFSSDKLPSY AALAGVESII DILVLTIAIA FFPNRNLMLM GVLPLMVFSC YERVLVVPDQ
YLFPLTKFFC FLAIIVSGQK VLSSWFNKAI LRNVEKQYLL AQFRRLALVD SLTDISNRRH
FDEILLQEIR ASERTGHPLG LVLIDVDYFK RLNDSAGHQS GDECLVEIAK ILTVTANRPR
DLAARYGGEE FVLLLPETDI AGCIEIAEAL KRKLAVAKLP HPDSDIGSLV TISQGVTLWK
EGMEAQELLE CADSLLYQAK SSGRDRFIAA
|
|---|
| |