| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0873 |
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| Symbol | |
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| ID | 6115107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1164301 |
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| End bp | 1166052 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641632357 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001759262 |
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| Protein GI | 170725236 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGATG GTTTGAAAGG ACCCAGCTCA AGCGAACTCC TATCGCAGGC ACAAAACAGG
TTGATTGAGC ATCTGCAAGC ATCAGAGAAA CGCTACGAAG ATTTAGTGGG ACATCTACGT
GATGTAGTCT TTCATCTCGA CTTAGCACTC AAGTGGACAT TTCTCAATCA GGCATGGCAT
GGTATGTCTG GTTACTCCAT AGAAAACTCC TTAGGCAAAT ATTTTGCTGA AAACCTCTCC
TCTCAAGACA CTCAAAAATG CACCGCGGGG TTTCAAGCAC TTCTCACCAA GCAGTTAACC
GAGATGAGTG AAGAGATAAC CTTTAATACT GCCGATAATG ATAAACGAAT ATTTGAGCTC
TCCTGCAGGG CGGTCAAAGA TGAAACGGGT CAGTTTGCTG GTTTTGCAGG CATAATCACA
GATATCACTG AACGGATTGT AGCCGAAAAT AAGATCACTT TTATGGCATA TCATGATGCC
TTAACTGGAG TAGCAAATAG ACGCCTTCTG ATGGAGCACT TAGCTCAAGA GCTGACAAAA
CCCTGCGGGC ACTGCTCAGC CCTACTCTAT ATCGACCTAG ATAATTTTAA ACAGGTTAAC
GATCATTATG GGCATACGGT AGGCGACCTT CTCCTATGTG AGGTCAGTGA TGTACTCAGC
GAGTATGCCC AGGATGAGGA AGATCTTGTT GCACGAATGG GCGGTGATGA ATTTATTCTC
TTTCTATCAA ACTTAGGAGA AAACTCCGCT TTAGTGACTC AAAAGCTAGT GCAGATAACC
GAGAAGATTC GGGTACAACT GAGCGAACCT GTACTGCTTG GTAAATTGAA AATTCAGATA
ACCAGCAGCA TAGGTGTCGT TACTTTAGAT CACGCCACCA TGAGCCACAG TGACATCTTT
AAATACGCCG ATGCCGCGCT ATATCACTCA AAAAATACAG GGAAAAACCA AGTCCGTTTC
TATGATGAGG AGCTAGAGCA AAGTGAACGA CGTCGTCACC AACTAGAAGA TGAACTAAGC
CAAGCTATAA CAAATGAAGA GTTCCTACTC TACTATCAAC CTCAAGTCGA TGCCGAGGGC
ACAACTATAC TAAAGGCCGA AGTACTGCTT CGCTGGCAAC ACCCTAGACA TGGAATCGTC
AACCCCGATG AATTTATCCC TCATCTCGAA GAGTACGGCC TAATTATTCC CGTCGGCAAG
TGGATTTTAG AGGAGAGCTG CCGCCAACTA AAGGTATGGC ATAATGCAGG AAAACATGAG
TTATGTTTAT CGATTAATGT CAGTGCTAAC CAATTTAAAC ACCCTGACTT TATTGAGTTT
ATTGAGATAT GTTTAATCAA ACATCAGATA AGCGGGGAAC AGATAGAGCT TGAATTAACC
GAAGGCGTCG CCATTCATGA TATCCCCTCA ACGATAAAAA AAATGGATAG ACTTCAAGAG
CTAGGTATTC GCATCGCCCT AGATGACTTC GGCACAGGCT ACTCCTCACT CTCCTACCTC
AAACACCTAC CAATCAACAC ACTTAAAATT GATCAATCCT TTGTCCAGGG TCTGCCCCAT
GATGGCTACG ATGCCGCCAT TGTTGAAACC ACCATGGTGA TGGCTCACCA TTTGGGTTTA
ACCGTTGTCG CTGAGGGGGT AGAAAATAGA GTACAACTCG CCTTTCTTAA AAAGCAGCAA
TGTCATCTTT ATCAAGGTTT TTTGTTTAGC CAGCCACTCA ATGTCGATCG CTTTAGCGAA
CTGATCTTGT AA
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| Protein sequence | MPDGLKGPSS SELLSQAQNR LIEHLQASEK RYEDLVGHLR DVVFHLDLAL KWTFLNQAWH
GMSGYSIENS LGKYFAENLS SQDTQKCTAG FQALLTKQLT EMSEEITFNT ADNDKRIFEL
SCRAVKDETG QFAGFAGIIT DITERIVAEN KITFMAYHDA LTGVANRRLL MEHLAQELTK
PCGHCSALLY IDLDNFKQVN DHYGHTVGDL LLCEVSDVLS EYAQDEEDLV ARMGGDEFIL
FLSNLGENSA LVTQKLVQIT EKIRVQLSEP VLLGKLKIQI TSSIGVVTLD HATMSHSDIF
KYADAALYHS KNTGKNQVRF YDEELEQSER RRHQLEDELS QAITNEEFLL YYQPQVDAEG
TTILKAEVLL RWQHPRHGIV NPDEFIPHLE EYGLIIPVGK WILEESCRQL KVWHNAGKHE
LCLSINVSAN QFKHPDFIEF IEICLIKHQI SGEQIELELT EGVAIHDIPS TIKKMDRLQE
LGIRIALDDF GTGYSSLSYL KHLPINTLKI DQSFVQGLPH DGYDAAIVET TMVMAHHLGL
TVVAEGVENR VQLAFLKKQQ CHLYQGFLFS QPLNVDRFSE LIL
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