| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0818 |
|---|
| Symbol | |
|---|
| ID | 6115052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1103213 |
|---|
| End bp | 1104283 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641632303 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001759208 |
|---|
| Protein GI | 170725182 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.94844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATA ATAACACTAT AAGTTTAATT GCGATTTCAA TTGTTTTATT CACCTCTAAT
AGCTCTGCTG GTGAGCTGTT TGATTGGTAT GGGACGATTA GAGCACAAGT GCAAGATACT
AATAATGGTG AACTAGAGTA TAAGGATAAC TATTCTCGCT TGGGGGCTGC GGGAGGTGCG
GAGATTTTAG ATGGCATAAA AGCCACTTAC AACGTTGAGT TTAGATTGTT CACCAGTGAC
GGTTCTTTTG CTGGCAGCGA TTCACGTGCT CGACTCGCTA ACATTGGCTT AGAGAGCGAG
TATGGCTCTC TACTCATAGG TAAGCAGTAT TCTCCACAGT GGAATTACAC CAACAATGCC
ATTGATATCT TTGCCGATGT TGACCAGTCT GCTGGTTGTA CTAATGAGGC ATCAGGGGTT
ATTTGTCACA CTAGTCGTTA TGGCTTATTT GGTTACGATC AAGCTGGGAA TGGTCACTAT
GTTGAGGTGT TAAGGCCTGA CAGGGCGGTC ACCTATACCA CGCCAGATCT TAATGGCTTT
CAAGCTTCTG CGATGGCGAT ACTCAATGAT GGTGATGTGA AAGCTAGTGC TGATGGCTCT
GATAGTGAAA CCTTAGTGGG CTATAACATA GCGGCAAAGT ATAAGTGGCA AGATTTTACA
CTTTCTGCTG CGCGGTTTGA GGTTAGCTCG TTTGTTGAAG AAGCCAGTAT TGATTCAGTT
CAGCTGGTAT ATAACCATGA CAAATTAAGT ATCGCAGCTC ATTATCAGAT GTCAGAGGAT
CTCAGGTTTT ATGAGGGATT ACCCGCAGCT GGTGAGATGG TTGAAGAGCA GGTTTATGAG
ATCTACGCTG GATATAAGTT TAGCGAAGTG CAGATACAAG CCGCGTATTC AATTGTTGAT
ATGACCTCTC CAAGTAATGT GAATGTCGAT ACTGACCATC TACTTATTGA TGTTATCTAT
CCCCATAAAT ATGGTCGTTT TTATGCTGAA TACAGCATTT GGGGGGATGA GGCCGAAGAG
TTCTTCATTG CAGCTGATAC TGTGATATTG GGTGTGCAGT TTGACTTCTA A
|
|---|
| Protein sequence | MKYNNTISLI AISIVLFTSN SSAGELFDWY GTIRAQVQDT NNGELEYKDN YSRLGAAGGA
EILDGIKATY NVEFRLFTSD GSFAGSDSRA RLANIGLESE YGSLLIGKQY SPQWNYTNNA
IDIFADVDQS AGCTNEASGV ICHTSRYGLF GYDQAGNGHY VEVLRPDRAV TYTTPDLNGF
QASAMAILND GDVKASADGS DSETLVGYNI AAKYKWQDFT LSAARFEVSS FVEEASIDSV
QLVYNHDKLS IAAHYQMSED LRFYEGLPAA GEMVEEQVYE IYAGYKFSEV QIQAAYSIVD
MTSPSNVNVD TDHLLIDVIY PHKYGRFYAE YSIWGDEAEE FFIAADTVIL GVQFDF
|
|---|
| |