Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0774 |
Symbol | |
ID | 6115008 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1052047 |
End bp | 1053129 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641632259 |
Product | rhomboid family protein |
Protein accession | YP_001759164 |
Protein GI | 170725138 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTATGA GCTGTCCTGG CTGCAACAGC AGCAATATGA AGGTTTATGA CTTCCACGGT GAGGAGGTAG ATAGCTGCCA AAGTTGCGGT GGGCTTTGGT TTGAGAACGG CGAGCTTAAT GCTGCACTTT CGAGCGCGGA TAATGGCGAT AGCTGTGTGC GAGTTGAGGA GAGTCTAGGC GAGCATTTGG GGGATTCTAA ACGTCACTGT CACCACTGTG ATGTGGGGAT GCAACATTAT CACTTGATGC AGGGCTATCA AATTGAGGTT GATGTTTGCC ATAGCTGTAG TGGCTTATGG ATTGATGAAG ATGAGAGAGT CAAAGTTGTA CAGTCTCCTT TAGTGAAGAG TCTGCTTGCT GATTTAGATG CAAAAATTAG CGCAAAAACC TGGTTCTTTC AGTTTTTATC CCAGATGCCA GTCGAGTTTA ACTTAAAGCC TAAATCTCGC CCGGTTGTCA CTTATCTCTT GCTGGCGTTG AATATTCTAA TTTTTCTTGC ATACGGTTTC GACATGTCGA CTACCGATAC TGTATTTGAA AACTTTGCCA TGCGATCAAA CGAGGTATTA GCGGGGCATC AGCCTTGGAC TTTGGTGAGC CATATGTTCC TCCATGGTGA CTTTATGCAC CTAGTGGGCA ATATGTACTT TCTCTATGTT GTTGGAGATA ACTTAGAAGA CGCTTTAGGG CGAGTGAAGT TTCTAGGTGT TTATCTTATT TGTGGCTTTG CCGCAGCGGC AGCACAGATA GCATCAGATC CGGGTTCTGG CATCTATATG GTCGGCGCCA GTGGTGCCAT TGCAGGGCTG TTTGGTATGT ACCTACTTTG GTTCCGCCAT GCGAGTTTGA CCTTTATGTT TGTGGTCTAT CAGAAGAAAT TAAGCCCAAT GGCGTTTTTT GCTATCTGGC TAGGTTTCAA TATTTTTGGC TTATTGATGG CGGGTCAAGG GGTGGCTTAC TGGGCTCATA TTGGTGGCTT TGTTGCTGGT TTAATTATCG GCGCGGCATT AAAAGATCGG GTGATGGAGT CTAACCCTAT CCTTGCCATG CTGAATGAGC CTGAGGTGAA GGTAGCACGT TAA
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Protein sequence | MIMSCPGCNS SNMKVYDFHG EEVDSCQSCG GLWFENGELN AALSSADNGD SCVRVEESLG EHLGDSKRHC HHCDVGMQHY HLMQGYQIEV DVCHSCSGLW IDEDERVKVV QSPLVKSLLA DLDAKISAKT WFFQFLSQMP VEFNLKPKSR PVVTYLLLAL NILIFLAYGF DMSTTDTVFE NFAMRSNEVL AGHQPWTLVS HMFLHGDFMH LVGNMYFLYV VGDNLEDALG RVKFLGVYLI CGFAAAAAQI ASDPGSGIYM VGASGAIAGL FGMYLLWFRH ASLTFMFVVY QKKLSPMAFF AIWLGFNIFG LLMAGQGVAY WAHIGGFVAG LIIGAALKDR VMESNPILAM LNEPEVKVAR
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