| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0731 |
|---|
| Symbol | |
|---|
| ID | 6114965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 999060 |
|---|
| End bp | 999875 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641632216 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001759121 |
|---|
| Protein GI | 170725095 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0390] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | [TIGR00245] conserved hypothetical protein TIGR00245 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.146509 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCGA GCATAGATAT TGGCTGGTGG CAACTCACTG CTTTTATGTC AGTGCTACTT
ATCCCTCTAG CGATAAATCT TAAACTGCAA CTAAAGCTAG GGCGGGAGAT ATCCATAGCC
GTGATCCGCA TGACGGTTCA ACTTATCCTT GTCGGTCTCT ACCTAGAGTT CCTTTTCTCT
CTAAACAGCC TATTCATCAA TAGTTTATGG TTGAGTATTA TGGTGCTTAT CGGCGCCAGC
GCTATTATCA CCGGGGCTAA ACTTCCCAAA CGAGCGCTTT ATCTACCTGT GCTGACAGGT
CTTGTCATAG GGGTCGCCCC TCTTATGCTG ATCTTGCTTT TACTACTGTT AAAACCACAA
CCTCTCTATA GTGCCCAATA CTTAATTCCA CTGGCAGGTA TGTTGTTAGG TAACTGCTTA
AGCGGCAATA TTGTTGCCCT ACAACGCTTA TTTAATGCTC TTGACGAGAA GAAGATGGAG
TATGAGGGGA TACTTGCTTT AGGAGGCACA CCTTACCAAG GGGCCTTCCC CTTTCTGCAA
TCTGCACTAT CTCAATCCTT GGCTCCTATA CTGGCCTCGA TGACCAGTAT GGGGTTGGTG
ACCCTACCGG GTATGATGAC AGGACAAATT TTAGGGGGAA GCGATCCCAT GTTAGCAGTG
AAATATCAGC TGATTATTCT GGTGGCGATT TTTGTGACCT TAACGGTCTC AGTCACTATA
TCTTTAACCC TGTCCATTAA GAGGAGCATC ACTGACACAG GTTTAATAAA GATAAAACAG
CTAAGATTGA GTCACCAAAG GGATAAGCAA ATCTAG
|
|---|
| Protein sequence | MESSIDIGWW QLTAFMSVLL IPLAINLKLQ LKLGREISIA VIRMTVQLIL VGLYLEFLFS
LNSLFINSLW LSIMVLIGAS AIITGAKLPK RALYLPVLTG LVIGVAPLML ILLLLLLKPQ
PLYSAQYLIP LAGMLLGNCL SGNIVALQRL FNALDEKKME YEGILALGGT PYQGAFPFLQ
SALSQSLAPI LASMTSMGLV TLPGMMTGQI LGGSDPMLAV KYQLIILVAI FVTLTVSVTI
SLTLSIKRSI TDTGLIKIKQ LRLSHQRDKQ I
|
|---|
| |