Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0724 |
Symbol | |
ID | 6114958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 989868 |
End bp | 991598 |
Gene Length | 1731 bp |
Protein Length | 576 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641632209 |
Product | spermidine synthase |
Protein accession | YP_001759114 |
Protein GI | 170725088 |
COG category | [R] General function prediction only |
COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0105401 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000291342 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAGTGAAG TAACTGAACC AGCACTGGCT GGAAACCCCA AAGAGAGAAA ATTAAGTTGG TTTGACGATA CGCTGCTACT TGGCATTATG GCGGTTCTGG CTGGGTGTGG CTTAATCTAT GAGTATCTAC TCTCCCATTA TGCAGGGCGC ATTCTCGGCG CACTAGAAGC CGCCATCTAC ACCATGATAG GCTTGATGAT CGTCTCCATG GGGATTGGGG CTTTTGCTGC CCGTAAGATT CGCTGCGCCT ATACAGGTTT TGCAGTACTT GAGCTCAGTG TCGCCCTGTG TGGATCACTG GCCATCTTGA TCACCGCCGC AATTATCGGT TTCGGCCAAC AGCTTCCTCT TATCATCGCC AGCACTTTGG GCCTGCCTCC AGATCTTCTA CCTGAAGGGG GTTTTATTGG TGTACTGCAA AAGCTCAGTG AGTACCTTCC CTATGTATGG GGCGTAATAT TGGGTTTGAT GATCGGCATG GAGATCCCTC TCATTGCTCG TGTTCGCCAA TCCCTGTGCG ATGAGCACCT GATGCACAAT GCGGGCACCA TATATGGCGC CGACTATGTA GGTGCAGGTA TAGGGGCAGC TATCTGGGTC AGCTTTATGC TTGCCATCGA TATTCAGTTG GCAGCGGCAT TAACCGCTAG CTTTAACTTG CTAGCTGGCT TTATTTTTAT CTGGCGTTTC TGGGATCGAA TTCGATTCGT AAAAATCTTG CTTGTGGGGC ATTTTATCGC CTCAGGTATA CTGCTACTAC TGGCTTGGCA CGGACCCAGC TGGGAGCAAA ATTTCAATAA CTTGCTCTAT AAAGACAATG TTATCTACGC CAAATCGACC CGTTTTCAGC AACTCACGTT CACCGAACGT TTAAGAGGCA GCGGTATCCC TCCTGTTTAT TCTCTCTATA TTAATGGCCG CCTGCAGTTC TCCAGTGAAG ATGAGCATAT TTATCACGCC TTTTTGGTTC ACCCAACCAT GGAAGCCAGC GCTCGTCACA ATAAGGTATT GATCATTGGC GGCGGAGACG GACTAGGGCT AAAACAGGTG CTTAAGTGGC AACCTGACTC TGTAACTTTA ATGGATCTCG ACAAAGATCT GCTGGCGCTT TTCACCTCCC ATGAGGCCGA TATGCCAGCG CGTTTGAGTG ACACATTACT GAGATTAAAT GGTGATGCCC TTAACGATCC TAGAGTCAAT GTGATTGTCG ATGATGCTTT TAATGGGGTG GATAAACTCC TTAGAAAAGG TGAGAAGTTT GATGCCATCA TTGTCGATCT GCCTGACCCG AGTCATCCTG ATCTAAACAA GCTATATTCA GATCTCTTTT ATAAAAAATT AAAGGAACTC TTGAGTGCAG ATGGTGCTCT AACCGTACAG TCAACCTCTC CTTACCATGC ACCTAAGGCA TTTATTTCAA TTGGAAAAAC CTTAGCACTA GCGGGTTTCG ATGTGAATCA ATATCATCAC AACGTCCCCA GTTTTGGAGA GTGGGGCTGG AGCATCGCCA CCGCATCTGG TAAAAATGCT AGAGCAAGGT TGAACGAAAT AACCCAACTA TCAGTTGAGG ATGACTGGTT AACCCCAGGT CTGATAAAAG GGTCTTTTGA GTTCCCAGCC AACTTCTATC AAGAGTTAGA GAATATAGAA GCGAATCGAA TTGGCTCCAC CCAGTTATAC CAGTACCACC AACAAGCTTG GTCTGAGAAT CAGGGAGTTA CACTATTCTG A
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Protein sequence | MSEVTEPALA GNPKERKLSW FDDTLLLGIM AVLAGCGLIY EYLLSHYAGR ILGALEAAIY TMIGLMIVSM GIGAFAARKI RCAYTGFAVL ELSVALCGSL AILITAAIIG FGQQLPLIIA STLGLPPDLL PEGGFIGVLQ KLSEYLPYVW GVILGLMIGM EIPLIARVRQ SLCDEHLMHN AGTIYGADYV GAGIGAAIWV SFMLAIDIQL AAALTASFNL LAGFIFIWRF WDRIRFVKIL LVGHFIASGI LLLLAWHGPS WEQNFNNLLY KDNVIYAKST RFQQLTFTER LRGSGIPPVY SLYINGRLQF SSEDEHIYHA FLVHPTMEAS ARHNKVLIIG GGDGLGLKQV LKWQPDSVTL MDLDKDLLAL FTSHEADMPA RLSDTLLRLN GDALNDPRVN VIVDDAFNGV DKLLRKGEKF DAIIVDLPDP SHPDLNKLYS DLFYKKLKEL LSADGALTVQ STSPYHAPKA FISIGKTLAL AGFDVNQYHH NVPSFGEWGW SIATASGKNA RARLNEITQL SVEDDWLTPG LIKGSFEFPA NFYQELENIE ANRIGSTQLY QYHQQAWSEN QGVTLF
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